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Accuri flow cytometry

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The BD Accuri flow cytometry system is a compact and easy-to-use analytical instrument designed for cell analysis. It utilizes principles of flow cytometry to detect and measure various properties of cells, such as size, granularity, and fluorescence.

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10 protocols using accuri flow cytometry

1

Cell Viability Assay with TX100 and SPD

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Cells were grown in twelve-well plates at a seeding density of 0.1million/ml. After reaching confluence, typically after 24 h, cells were treated with TX100 with and without SPD. Cell viability was measured using propidium iodide staining as previously described97 (link)–99 (link). After the treatments, floating dead cells were collected from the medium. The attached cells were trypsinized using trypsin–EDTA (Gibco, Carlsbad, CA #15400054) and then collected into the 4% FBS. The suspension of dead cells was centrifuged at 15,000g for 10 min, while the suspension of trypsinized cells was centrifuged at ~ 700g for 10 min. Subsequently, the pellets were mixed in a 200 µL of PI (10 µg/ml, diluted in 4% FBS) and incubated at room temperature for 15 min. The flow cytometry measurements were performed using the BD Accuri flow cytometry (BD Biosciences, USA) and analyzed as previously described100 (link),101 (link).
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2

Immunofluorescence Staining of Cells

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For surface immunofluorescence staining, cells were incubated with 10%AB serum in PBS containing 1% BSA and 0.1% NaN 3 (FACS) buffer for 30 minutes at 4°C to block Fc receptors. For intracellular immunofluorescence staining, cells were fixed with 4% paraformaldehyde for 15 minutes at room temperature. The fixed cells were permeabilized with 0.1% saponin, 5% FCS, and 0.1% NaN 3 in PBS to allow the antibodies to access the intracellular targets. After that, the cells were blocked by incubation with 10% AB serum in 0.1% saponin, 5% FCS, and 0.1% NaN 3 in PBS for 30 minutes at 4°C.
Then, the blocked cells were stained with pre-immunized sera, post-immunized sera, or culture supernatant of hybridoma cells for 30 minutes at 4°C. After washing, the bound antibodies were detected by staining with FITC conjugated goat anti-mouse IgG (H + L) F(ab')2 (Sigma Aldrich) for 30 minutes at 4°C. The stained cells were analyzed by BD Accuri flow cytometry (BD Bioscience, San Jose, CA, USA).
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3

Flow Cytometric Analysis of Platelet Activation

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Flow cytometric assays were performed in 96-well plates. U46619 or CRP-XL-stimulated fibrinogen binding and P-selectin exposure were measured in PRP using FITC labelled rabbit anti-human fibrinogen antibodies (Dako UK Ltd) and PE/Cy5 labelled mouse anti-human anti-CD62P antibody (BD Biosciences, UK) respectively in the presence or absence of different antagonists or inhibitors for 3 minutes prior to activation (e.g. superoxide dismutase- SOD, catalase, inhibitor of PI3-Kinase- LY294002, inhibitor of PI3K-δ (Cal), Akt inhibitor IV, inhibitor of MEK (cobimetinib), Indomethacin, TXA2 antagonist (GR32191) or TLR4 antagonist (LPS RS ultrapure) or vehicle (containing 0.01% dimethyl sulphoxide or distilled water)). Platelets were stimulated with U46619 or CRP in the presence or absence of LPS from Escherichia coli- O111:B4 or from Escherichia coli- K12 for 5 minutes at room temperature and then fixed in 0.2% (v/v) formyl saline prior to analysis by BD Accuri flow cytometry (BD Biosciences, Oxford, UK) equipped with a 488 nm wavelength argon laser, 510–540 nm band pass filter. Data were acquired from 10000 cells and recorded as percentage of cells positive or median fluorescence intensity (MFI).
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4

Cytokine Profiling of PMMA Exposure

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After 72 h of PMMA exposure in the range of 0.25–1 mg/mL, the levels of TNF-α, IL-1β, IL-6, IL-8, IL-10, IL-12, IL-17, IL-18, IL-23, IL-33, MCP-1, INF-α, and IFN-γ were assessed by LEGENDPlex™ human inflammation panel (Biolegend, USA) using BD Accuri flow cytometry (BD Biosciences, USA) following the manufacturer’s protocol. The cell culture supernatant was used for the determination of cytokine secretion. The size of the beads is represented in the FL-3 channel, and the fluorescence intensity in the FL-2 channel correlates proportionally with cytokine concentrations (pg/mL). The cytokine concentration was calculated using the standard curve, and the results were normalized to the control group.
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5

Intratumoral Lymphocyte Profiling by Flow Cytometry

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Flow cytometry was performed as described previously (22) . Briefly, cell staining was done using FITC, Alexa Flour 488, PE, APC, PE-Cy7, or PerCP Cy5.5 conjugated rat mAbs against CD4, CD8, Foxp3, CCR7, CD62L, CD11b, and GR1 (Lyc6Gþ/Lyc6C; BD Biosciences). APC-conjugated hamster IgG against CD3e (eBioscience). Appropriate mouse IgG isotypes were used as controls (BD Biosciences). Intracellular Foxp3 staining was done using Mouse Foxp3 Buffer Set (BD Biosciences) according to the manufacturer's protocol. Intratumoral lymphocytes were stained and analyzed by flow cytometry following collagenase type I (Gibco, cat #17100-017) treatment according to the manufacturer's protocol. Briefly, tumor tissue was washed with PBS, cut into a small piece (>1 Â 1 mm), and incubated with collagenase type I (100 U/mL) for 4 hours at 37 C. Tumor fragments were then disaggregated through 100-mm cell strainers, and single cells were collected and enumerated. All Samples were run using BD Accuri Flow Cytometry (BD Biosciences) and analyzed by FlowJo software (FlowJo Enterprise).
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6

Apoptosis Induction Assay in Cell Lines

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Apoptosis assay was performed using apoptosis assay kit (Invitrogen, USA). Briefly, HeLa, MCF-7 and RWPE-1 cells were seeded in 24 well tissue culture plates (about 2 × 105 cells/well) and incubated for 24 h. Subsequently, culture medium was replaced with fresh medium containing 2.5 μM of LS10 along with a negative control (cells without peptide). Apoptosis induced by the peptide was examined by Annexin V/PI staining followed by flow cytometry analysis of stained cells. Briefly, after 2 h and 24 h of incubation with LS10, cells were harvested, washed twice with cold PBS and resuspended in 1X Annexin binding buffer. Cells were then transferred to fresh 1.5 ml tube containing 100 μl of binding buffer and 5 μl of FITC-conjugated Annexin V and 1 μl of PI were added. The cells were vortexed gently and incubated for 15 min at room temperature in dark. After incubation, 200 μl of 1X Annexin binding buffer was added to each tube and stained cells were analyzed by Accuri flow cytometry (BD Biosciences, USA) with CellQuest software (BD Biosciences, USA) used for analysis of the results.
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7

Apoptosis Induction in Flp-In T-REx293 Cells

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Flp-In T-REx293 cells were seeded in 6 well plates at 50–60% confluence. After 24 hrs, doxorubicin (1 uM) and doxycycline (1 ug/ml) were added to each well. After 20 hours, cells were harvested and stained according to the protocol of FITC-Annexin V Apoptosis Detection kit (BD Pharmingen). Briefly, trypsinized cells were washed twice with cold PBS and then resuspended in 1X binding buffer at a concentration of 1 × 106 cells/ml. 100 ul of the solution was transferred to 1.5 ml tube. 5 ul of FITC Annexin V and 5 ul PI were added to each tube and incubated for 15 mins at RT in the dark. Then 400 ul of 1X binding buffer was added to each tube. Stained cells were analyzed by using an Accuri Flow Cytometry (BD Biosciences). The percentage of FITC-positive cells was calculated using the CFlow software.
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8

Cellular Internalization Dynamics of ICG-labeled Micelles

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The internalization and distribution of cells were observed by a laser confocal fluorescence microscope. Briefly, SGC7901 cells were seeded in 35-mm cell petri dishes (Nest, 801002) and cultured 24 h for cell attachment. The cell density per dish was 5 × 104. Next, replace the media with new serum-free media containing DSPE-PEG@ICG and DSPE-PEG-RGD@ICG, respectively (an equivalent ICG concentration: 1 mg/ml). After incubated for 4 and 12 h, the cells were washed with PBS and fixed with 4% paraformaldehyde. Afterward, the cells were stained with 10 μg/ml DAPI for 10 min and washed with PBS. Finally, a laser confocal fluorescence microscope (Zeiss LSM 710, Germany) was used for observing the binding and internalization of the micelles. The parameters were set at λex 405 nm for the nuclei and λex 633 nm for ICG.
For further quantitative analysis, 1 × 105 SGC7901 cells were seeded in 12-well plates per well and cultured with serum-free media containing DSPE-PEG@ICG and DSPE-PEG-RGD@ICG (an equivalent ICG concentration: 1 mg/ml) for 12 h. At predetermined times, the cells were harvested and washed with PBS. Then, the cells were re-suspended in PBS and immediately quantitatively analyzed by Accuri flow cytometry (BD, United States).
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9

Apoptosis Assay in Mouse Primary Cancer Cells

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For apoptosis assay, mouse primary cancer cells were seeded onto a six-well plate and incubated overnight under high or low glucose condition. Apoptotic cells were measured by using FITC-Annexin V Apoptosis Detection Kit (BD Pharmingen) described by the manufacture. Briefly, cells were incubated with FITC-Annexin V in FACS staining buffer for 15 min. Stained cells were subjected to the CFlow software analyses using an AccuriFlow Cytometry (BD Biosciences).
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10

Apoptosis Analysis of Pancreatic Cancer Cells

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Pancreatic cancer primary cells were seeded in six‐well plates at 50–60% confluence and harvested following treatment with 6‐TG (1 μm) for 48 h. After 48 h, cells were harvested and stained according to the protocol of the FITC‐Annexin V Apoptosis Detection kit (BD Biosciences, Franklin Lakes, NJ, USA). The percentage of apoptotic cell population was detected by Accuri Flow Cytometry (BD Biosciences) and calculated using the cflow software (National Institutes of Health, Bethesda, MD, USA).
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