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22 protocols using flow cytometry

1

Inflammatory Mediator Concentration in Newborns

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The concentration of inflammatory mediators within 3 days after birth was measured. The concentration of CRP in venous blood was measured by routine latex-enhanced immunoturbidimetry (Roche Diagnostics). Routine WBC was determined by flow cytometry (Sysmex). The PLT and MPV were measured by whole blood cell automatic analyzer (Japanese Sysmex KX221). The average concentration of inflammatory mediators was analyzed.
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2

Apoptosis Evaluation of Defensin and Nisin

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1× 106 cells were plated into each well of 6-well plates and mixed up with different concentrations of α-defensin (5, 10, and 15 µM) and nisin (25,50 and 75 µM) or any peptides addition. After being incubated for 24 hours, cells were harvested and eluted twice with cold PBS and reconstituted in 1× binding buffer. Cells were then added to a tube of 1.5-ml previously contained with 100 µL of binding buffer and 5 µL of FITC-conjugated Annexin V. Afterwards, PI included. Following a gentle vortex, cells then incubated for 15 min at room temperature in the dark. Stained cells were counted by flow cytometry (Sysmex Partec, Germany) after the addition of 400 µL of 1× binding buffer, and FloMax software used for the analysis of the results.
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3

Triploid A. japonicus Induction

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The triploid A. japonicus induced by hydrostatic pressure came from the same batch as the diploid control group produced at the Ministry of Agriculture and Rural Affairs’ North Key Laboratory of Marine Aquaculture at Dalian Ocean University, and all were 1.5-year-old A. japonicus. During the experiment, the breeding conditions were as follows: water temperature 14 ± 1.5 °C, salinity 30 ± 1, and pH 7.0. During the breeding process, the water was changed every 2 days, and feeding was done once a day (feed formula: sea mud, compound feed, spirulina powder, purslane powder). We used flow cytometry (Sysmex, Japan) to determine the ploidy of A. japonicus, and the procedure was the same as Han’s (Han et al. 2021 (link)).
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4

Cell Cycle Analysis by Flow Cytometry

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A Cell Cycle Detection Kit was used to detect the cell cycle distribution. Appropriate number of cells were seeded into 6-well plates and then treated with POS at the prescribed concentrations for 24 h. The cells were fixed with 70% (v/v) cold ethyl alcohol at 4°C for overnight and stained with 500 μL RNase A/PI staining solution (v/v, 1:9) in the dark at room temperature for 30 min. The cell DNA content was tested by flow cytometry (Sysmex, North Rhine-Westphalia, Germany) and analyzed with FCS Express software version 6.
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5

Apoptosis Assessment by Flow Cytometry

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Cells were seeded in 6-well plates overnight and treated with DMSO or POS as indicated. Then, the treated cells were digested, harvested, and stained with acridine orange (AO) solution (1 μg/ml). After washing with PBS, the cells were detected by flow cytometry (Sysmex). The results were handled by FCS Express software version 6.
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6

Cell Cycle Analysis of hMSCs

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Healthy-hMSCs, TUDCA-treated healthy-hMSCs, CKD-hMSCs, TUDCA-treated CKD-hMSCs, TUDCA-pretreated CKD-hMSCs after treatment with si-PRNP, or TUDCA-pretreated CKD-hMSCs after treatment with si-Scr were harvested and fixed with 70% ethanol at −20 °C for 2 h. After two washes with cold PBS, the cells were subsequently incubated with RNase and the DNA-intercalating dye propidium iodide (PI; Sysmex) at 4 °C for 1 h. Cell cycle of the PI-stained cells was characterized by flow cytometry (Sysmex). Events were recorded for at least 104 cells per sample. The sample data were analyzed in the FCS express 5 software (DeNovo Software). Independent experiments were repeated 3 times.
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7

Cell Cycle Analysis of TH1 Cells

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Untreated TH1 cells, P-cresol-treated TH1 cells, and P-cresol-pretreated TH1 cells after treatment with si-CK2α or si-Scr were trypsinized and fixed with 70 % ethanol at -20 °C for 2 h. Next, the groups were incubated with RNase and the DNA-intercalating dye propidium iodide (PI; Sysmex) at 4 °C for 1 h. PI-stained groups were characterized by flow cytometry (Sysmex). Events were recorded for at least 10,000 cells per sample. The sample data were analyzed using the FCS express 5 software (DeNovo Software). Independent experiments were carried out thrice.
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8

Mitochondrial ROS Analysis by Flow Cytometry

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flow cytometry was used to analyze mitochondrial ROS (mROS) production. After treatment, the cells were washed three times with PBS and then resuspended in PBS using 0.25% trypsin. Subsequently, the cells were incubated with the MitoSOX red mitochondrial superoxide indicator (Molecular Probes, Eugene, OR, USA) for 15 minutes at 37°C in the dark.30 (link) After three washes with PBS, mROS production was analyzed via flow cytometry (Sysmex Partec GmbH, Görlitz, Germany), and the data were analyzed using the Flowmax software (version 2.3; Sysmex Partec GmbH). The experiments were performed in triplicate and repeated three times with similar results.
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9

Flow Cytometry Analysis of Kio Cells

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The Kio sperm-like cells were blown down gently by PBS. After being filtered through a 40 μm cell strainer, the cells were incubated with DAPI (Invitrogen) for about 15 min, then examined by flow cytometry (Sysmex-partec, Germany). As previously described, specific methods were carried out (Peng et al., 2020 (link)).
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10

Cytoplasmic and Mitochondrial Calcium Dynamics

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Cells were incubated with Fluo-3 AM (S1056, Beyotime) or Rhod-2 (Abcam, ab142780) for 30 min. After washing with PBS, the intensities of cytoplasmic Ca2+ and mito-Ca2+ were detected by flow cytometry (Sysmex Partec GmbH, Germany) and immunofluorescence using a Leica confocal microscope (Leica, Wetzlar, Germany). Cytoplasmic ROS was measured by DCFH-DA (Sigma) (Domingues et al., 2020 (link)). ImageJ was used to assess fluorescence intensity (Fluo-3, Rhod2, and TMRM). Data (F/F0) were obtained by dividing the fluorescence intensity (F) by (F0) at the resting level (t = 0), which was normalized by the control group. The TUNEL assay was used according to the manufacturer’s instructions to detect cell death after hypoxic injury. For quantification, the numbers of TUNEL-positive cells were calculated in at least 10 random separate fields to obtain the average percentage in different groups (di Somma et al., 2020 (link)).
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