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5 protocols using vegfa sc 152

1

Quantifying Renal VEGFA and CD34 Expression

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Renal sections were analyzed for the abundance of vascular endothelial growth factor A (VEGFA; SC-152; Santa Cruz Biotechnology, Santa Cruz, CA, USA) using a biotinylated ABC kit (Vector Laboratories, Peterborough, UK) and cluster of differentiation factor 34 (CD34; ab81289; Abcam, Cambridge, UK) using a Leica Bond-Max automated system (Leica Microsystems, Wetzlar, Germany). For VEGFA, the primary antibody was diluted 1:200 in PBS and 0.05% Tween and incubated overnight at 4°C. For CD34, the primary antibody was diluted 1:1000 in Bond Primary Antibody Diluent (Leica) and incubated for 30 min at room temperature. Heat-mediated antigen retrieval was carried out for 10 min using EDTA (pH 9). Negative controls were included during each IHC run by omission of primary antibody and using a rabbit IgG control (Vector Laboratories). For both proteins, adult ovine kidney was used as a positive control.
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Immunohistochemical Analysis of Kidney Tissue

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Sections from paraffin embedded kidney biopsies with chronic kidney disease (normal and reduced eGFR) and kidney tissue obtained from tumor nephrectomy specimens (n = 54) were stained with antibodies against HIF1α, VEGFA, and ABCG2. After antigen retrieval, slides were incubated with the following antibodies: HIF1α clone mgc3 ab16066 (Abcam, Cambridge, UK), dilution 1:400; VEGFA sc-152 (Santa Cruz Biotechnology), dilution 1:300; ABCG2 ab3380 (Abcam, Cambridge, UK), dilution 1:60. The immunohistochemical staining was conducted on automated staining systems (ABCG2 on Ventana BenchMark, Ventana Medical Systems, USA; HIF1α and VEGFA on Leica Bond System, Leica Biosystems) following the manufacturer’s instructions. Visualization was performed using the avidin–biotin complex method leading to a brown staining signal. For all stainings the intensity in the glomerular and tubulointerstitial compartment (negative = score 0, weak = score 1, strong = score 2) in comparison to expression in normal tissue was assessed. Statistical analysis using Fisher’s exact test was performed with SPSS statistics software version 22 (IBM, USA). p-values < 0.05 were considered as significant.
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Western Blot Quantification of Protein Expression

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Cells were homogenized in RIPA buffer. Protein concentration was determined by Bradford method (Bio-Rad Laboratories, CA). Proteins (25 μg) from cell lysates were separated by electrophoresis, and electrotransferred to nitrocellulose membrane Hybond-ECL (Amersham, Buckinghahmshire, UK). Later, membranes were stained with Ponceau S to be used as the loading control. Membranes were then blocked in TBS-T containing 5% non-fat powdered milk, followed by overnight incubation with primary antibodies (ESR1 Sc-542–1:1000; VEGFA Sc152–1:500; Santa Cruz, Dallas, TX, USA). Blot´s intensity was quantified by densitometry (ImageScanner III, GE Healthcare, Uppsala, Sweden). Results were expressed as arbitrary units in comparison to controls.
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4

Optimized Allopurinol and Cisplatin Protocol

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The FDA-approved drug library and allopurinol were purchased from Selleck Chemicals. allopurinol was dissolved with dimethyl sulfoxide (DMSO) for cell experiments. For animal study, allopurinol was dissolved in 0.5% sodium carboxymethyl cellulose (CMC-Na, purchased from Selleck Chemicals). Cisplatin was purchased from HANSON Pharma and dissolved in 0.9% sodium chloride.
The following antibodies were used in this study: The TMTC3 (sc-398137) and VEGFA (sc-152) antibodies were purchased from Santa Cruz. The β-actin (3700 S) and STAT3 (8768s) antibodies were purchased from Cell Signaling Technology. The HIF-1α (20960-1-AP), IMPDH2 (67663-1-Ig) antibodies were purchased from Proteintech. The p-STAT3 (bs-1658R) antibody was purchased from Bioss. The Flag (F3165) and β-tubulin (T5201) antibodies were purchased from Sigma. The p-JAK2 (ab32101) antibody was purchased from Abcam. The JAK2 (A19629) antibody was purchased from ABclonal Technology.
The siRNAs of IMPDH2 were synthesized by GenePharma (Suzhou, China). The siRNA sequences for IMPDH2 and primers for qPCR were listed in Supplementary Table 1.
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5

Immunofluorescence and Western Blot Analyses

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Subconfluent cultures were fixed using 4% paraformaldehyde at room temperature (RT) for 10 min, followed by permeabilization with 0.01% Triton ×100 for 4 min. Cells were stained with primary antibodies—YKL-40 (sc-393590), VEGF-A (sc-152), and VEGF-B (sc-1876) from Santa Cruz Biotech, Olig 2 (ab42453), MAP2 (ab11267), ANG1 (ab8451), and ANG2 (ab8452) from Abcam, GFAP (mab 360) from Millipore, and nestin (N5413-R) from Sigma, for 2 h at RT. Subsequently, cells were stained with Alexa Fluor-conjugated secondary antibodies (Invitrogen). For Western blotting, cell monolayers were washed thrice with 1× PBS and harvested using trypsin. Cell pellets were lysed in MPER containing 1× protease inhibitor cocktail (Thermo Scientific). A total of 40 µg of cell lysate was loaded in each experiment, and electrophoresed samples were transferred onto PVDF membrane (Pall Life Science). Membranes were probed using respective primary antibodies (CD44, HPA005787, dilution 1:1,000, Sigma; α-tubulin, T9026, dilution 1:5,000, Sigma; and VEGF-A, VEGF-B, ANG1, and ANG2 at 1:1000 dilution) overnight. Membranes were washed thrice in 1× PBST and probed with secondary antibody (antimouse HRP, 616520, dilution 1:5,000; antigoat HRP, 611620, dilution 1:1,000; and antirabbit HRP, 656120, dilution 1:1,000; Invitrogen) for 2 h at RT. Blots were developed using ECL substrate (Thermo Scientific).
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