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32 protocols using hrp conjugated secondary antibody

1

Protein Extraction and Western Blot Analysis

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Lung tissues and PASMCs were lysed in radio immunoprecipitation assay (RIPA) lysis buffer (containing 1% PMSF) on ice to extract total proteins. Nuclear and cytoplasmic proteins were extracted following the manufacturer's recommendations of the nuclear and cytoplasmic extraction kit (Beyotime). After protein quantification, the same amount of protein from each sample were separated on sodium dodecyl sulphate‐polyacrylamide gel electrophoresis (SDS‐PAGE), and then the proteins on the gel were transferred to PVDF membranes (Millipore) by semi‐dry electrophoretic transfer system (Bio‐rad). The membranes were then blocked with 5% BSA and incubated with primary antibodies against calpain‐1 (1:1000, proteintech), HIF‐1α (1:1500, ABclonal), P65 (1:2000, proteintech), β‐actin (1:5000, proteintech), Lamin B (1:10000, proteintech), VEGF (1:1000, ABclonal), TGF‐β1 (1:800, Wanleibio), PCNA (1:1500, ABclonal), MMP2 (1:1000, ABclonal) and collagen I (1:1000, Wanleibio) overnight at 4°C. On the second day, membranes were incubated with HRP‐conjugated secondary antibodies (1:10000, ABclonal). The immune response bands were visualized with a chemiluminescence reagents (Biosharp).
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2

Western Blot Analysis of Apoptosis Markers

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The protein sample was electrophoretically separated on 12% SDS−PAGE gels after measuring the protein concentration and transferred onto 0.45-mm PVDF membranes (Millipore). Then, the membranes were incubated with primary antibodies (anti-caspase-8, anti-MyD88, anti-PERK (EIF2AK3), and anti-CD8A [ABclonal]) at 4 °C overnight followed by HRP-conjugated secondary antibodies (ABclonal). The primary antibody was diluted at 1:1000 and the secondary antibody was diluted at 1:3000. Finally, a ChemiDoc Imaging System (Bio-Rad, USA) was used to capture the images, and ImageJ was used for quantitative analysis. Student’s t test was used for data comparisons between glioma tissues and normal brain tissue groups.
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3

Western Blot Protein Expression Analysis

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The protein expression of cells or tissues was detected by western blot analysis
as previously described.19 (link)
In brief, cells or tissue samples were collected and homogenized using
radioimmunoprecipitation assay buffer. Equal total proteins (30 µg/lane) were
separated by sodium dodecyl sulfate–polyacrylamide gel electrophoresis (Bio-Rad,
USA) and transferred onto the polyvinylidene difluoride membrane (Millpore,
USA). Next, the membranes were blocked by 5% bovine serum albumin (BSA) for 2
hours at room temperature, followed by incubation with primary antibodies
against Wave2 (1:500, ABclonal, China) and GAPDH (1:1000, ABclonal, China) at 4
°C overnight. After washing with 1× phosphate-buffered saline (PBS) for 3 times,
the membranes were incubated with HRP-conjugated secondary antibodies (1:5000,
ABclonal, China) for 2 hours at room temperature. The bands were then developed
using enhanced chemiluminescence chromogenic substrate (GE Healthcare, UK) and
analyzed by the Image J software. GAPDH was used as a control in this study.
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4

Chondrocyte Viability Assay with D-Galactose

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The chondrocytes were preincubated with PA at concentrations of 0, 2.5, 5, or 10 μM for 24 h and then exposed with D-gal (5 mg/ml) for 24 h. Subsequently, the chondrocytes were lysed by radioimmunoprecipitation assay (RIPA) buffer (Beyotime, China) containing a mixture of protease and phosphatase inhibitors. Protein samples were subjected to SDS-PAGE and transferred to PVDF membranes (Bio-Rad, USA). The membranes were blocked by 5% skim milk for 1 h and incubated overnight at 4°C with the appropriate primary antibodies, respectively. On the following day, after washing with TBST for 30 min, the membranes were incubated with HRP-conjugated secondary antibodies (1 : 5000, Abclonal, China) for 1 h at room temperature. The enhanced chemiluminescence method was conducted to observe the bands, and ImageJ software was applied for quantitative analysis.
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5

Western Blot Analysis of Galectin-3

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The heart sample was homogenized using metal beads in RIPA buffer with protease inhibitor (Beyotimem, Shanghai, China) and PMSF (Beyotime, Shanghai, China). The concentration of total protein was determined by the BCA (Boster Biological Technology, Wuhan, China) method. A 5× loading buffer (Beyotime, Shanghai, China) was added to the sample at the ratio of 4:1 and boiled for 5 min at 95 °C. Then, 30 μg protein of each sample was run on a 12% SDS-PAGE gel (Epizyme Biomedical Technology, Shanghai, China), transferred to PVDF membranes (Boster Biological Technology, Wuhan, China) and then blocked with 5% non-fat milk for 60 min. The membranes were incubated with primary antibodies against Gal-3 (ABclonal, Wuhan, China) or GAPDH (ABclonal, Wuhan, China) at 4 °C overnight, and then membranes were washed with TBST and incubated with HRP-conjugated secondary antibodies (ABclonal, Wuhan, China) for 1 h. The blots were developed using the ECL chemiluminescence kit (Boster Biological Technology, Wuhan, China). The levels of target proteins were normalized to GAPDH.
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6

Western Blot Protein Analysis

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Cells were harvested, washed and lysed in RIPA buffer (Thermo, MA, USA) containing protease inhibitors. Equal amounts of protein were separated with SDS-PAGE and transferred to the membranes (Millipore, Boston, MA, USA). The membranes were blocked and incubated with the indicated primary antibodies at 4 °C overnight. Then they were washed and incubated with horseradish peroxidase (HRP)-conjugated secondary antibodies (ABclonal) the next day for 1h at room temperature. Detection was performed with Tanon imaging system (Shanghai, China).
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7

Immunohistochemical Analysis of ICAM-1 in Mouse Tissues

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Mouse tissues fixed in 4% paraformaldehyde were embedded in paraffin and sliced into 4 μm thick sections for hematoxylin and eosin (H&E) staining and immunohistochemistry (IHC) staining. For IHC, tissue sections were deparaffinized in xylene and rehydrated in graded ethanol, and the antigens were retrieved with citrate buffer. After inactivation of endogenous peroxidase with 3% H2O2, sections were blocked with 1% bovine serum albumin (BSA), incubated with diluted rabbit anti-ICAM-1 (10831–1-AP, Proteintech) overnight at 4 °C, and then stained with horseradish peroxide (HRP)-conjugated secondary antibodies (Abclonal) and 3,3-diaminobenzidine (DAB) substrate. Images of stained sections were captured with a light microscope (Zeiss, AX10 imager A2, Oberkochen, Germany) and quantified using NIH ImageJ software.
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8

Protein Expression Analysis in Stimulated NP Cells

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Stimulated NP cells were collected and then lysed with RIPA lysis buffer (CWBIO, Beijing, China) for total protein, or with an extraction kit for cytoplasmic and nuclear protein (CWBIO). After being centrifuged and collected, the supernatant containing proteins was then quantified using a BCA assay kit (CWBIO). Afterwards, the proteins were separated by SDS-PAGE and electro-transferred to polyvinylidene difluoride membranes (Millipore, Darmstadt, Germany). After being blocked with 5% bovine serum albumin in TBST for 1 h, the membranes were then incubated at 4°C overnight with anti-CBX4 (1:1000; Abcam), anti-MMP3 (1:1000; Abcam), anti-MMP13 (1:1000; Abcam), anti-ADAMTS5 (1:1000; Abcam), anti-COX2 (1:1000; Abcam), anti-COL2A1 (1:1000; Abcam), anti-P53 (1:1000; Abcam), anti-P21 (1:1000; Abcam), anti-β-actin (1:1000; Abclonal, Wuhan, China), anti-p-p65 (1:1000; Abclonal), anti-p65 (1:1000; Abclonal), or anti-Histone H3 (1:1000; CST, Danvers, USA) antibodies. Afterwards, the membranes were incubated with the corresponding HRP-conjugated secondary antibodies (1:8000; Abclonal). The protein bands were visualized using an Enhanced Chemiluminescence kit (Vazyme, Nanjing, China) and then quantified by Image J (National Institutes of Health, Bethesda, USA).
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9

Western Blot Analysis of Renal Proteins

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Renal tissues were lysed in RIPA lysis buffer containing protease inhibitor. Equal amounts of proteins (50 μg) were loaded and separated by 10% SDS-PAGE. The proteins were transferred onto polyvinylidene fluoride membranes (Millipore, USA). The membranes were blocked with 5% skimmed milk in Tris Buffered saline Tween (TBST) for 1 h at room temperature and were then incubated with appropriate primary antibodies against GPX4 (1:10000, Abcam), ACSL4 (1:10000, Abcam, UK), MLKL (1:1000, Abgent), p-MLKL (1:1000, Abcam), RIPK3 (1:1000, ABclonal), p-RIPK3 (1:1000, Abcam), GSDMD (1:1000, Santa) and GAPDH (1:5000, ABclonal) at 4 °C overnight. The blots were washed with TBST for 5 min and incubated with HRP-conjugated secondary antibodies (1:5000; ABclonal) for 1 h. After washing with TBST, the blots were visualized by the enhanced chemiluminescence method (ECL, Bio-Rad). The relative intensity of the target band was normalized to the corresponding loading control intensity and quantified by using ImageJ (NIH, USA).
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10

Quantification of Ferroptosis-Related Proteins

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Protein concentrations were measured using the BCA Protein Assay Kit and then used for SDS-PAGE and transferred onto nitrocellulose membranes by wet electrophoretic transfer. The membranes were blocked and incubated with primary antibodies against Slc7a11, Gpx4, Slc40a1 (A14884, ABclonal, Wuhan, China), TFR (ab214039, Abcam, Cambridge, MA, USA), β-actin (ABclonal, Wuhan, China), and GAPDH (ABclonal, Wuhan, China) overnight at 4 °C and with appropriate HRP-conjugated secondary antibodies (Abclonal, Wuhan, China) for 1 h at room temperature. An Odyssey infrared imaging system (Li-Cor Biosciences, Lincoln, NE, USA) was used for visualization after coating with Immobilon Western Chemiluminescent HRP Substrate (Millipore Corporation, MA, USA).
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