The largest database of trusted experimental protocols

8 protocols using hu6 mcs cmv puromycin

1

Pancreatic Cancer Cell Line Characterization and Genetic Manipulation

Check if the same lab product or an alternative is used in the 5 most similar protocols
AsPC-1, BxPC-3, Capan-2, Mia PaCa-2, PANC-1, and SW1990 cells were obtained from American Type Culture Collection (ATCC; USA), AsPC-1, BxPC-3, Capan-2, SW1990, and HPDE cell lines were cultured in RPMI 1640 (Gibco, USA), while Mia PaCa-2 and PANC-1 cell lines were grown in DMEM (Gibco, USA). Both medium were supplemented with 10%FBS and 1%Penicillin/Streptomycin. All cell lines were cultured in a humidified atmosphere containing 5%CO2/95% air at 37°C. All the cell lines had been authenticated through STR profiling and confirmed to be mycoplasma-free.
Lipofectamine3000 was purchased from Invitrogen (Invitrogen, USA); 3 small interfering RNAs (siRNA) (st-h-MINDY2-1 GCACAAGCCTCTCCATCAA, st-h-MINDY2-2 GCTGAGCAGTTTCTAAATA, and st-h-MINDY2-3 GTTCGAGTGTTTGAATATA) were provided by RiboBio (China). GeneChem (China) was responsible for designing and manufacturing lentivirus carrying negative control, MINDY2 overexpression vector (Ubi-MCS-3FLAG-SV40-puromycin), MINDY2-encoding short hairpin RNA (shRNA)(hU6-MCS-CMV-Puromycin), and shRNA targeting ACTN4(hU6-MCS-CMV-Puromycin). The directions were strictly followed during every infection or transfection step.
+ Open protocol
+ Expand
2

Cellular Foam Cell Generation

Check if the same lab product or an alternative is used in the 5 most similar protocols
THP-1 cells were obtained from American type culture collection (ATCC, Rockefeller, USA), and RAW264.7 macrophages from the Institute of Life Science Research Center, Shanghai (Chinese Academy of Science, Shanghai, China). Both cell lines were maintained in RPMI Medium 1640 supplemented with 10% fetal bovine serum (FBS) at 37°C in an atmosphere containing 5% CO2. After 3‒5 days, THP-1 cells were treated with phorbol-12-myristate-13-acetate (PMA, 160 nmol/L; Sigma, St. Louis, USA) for 48 h. The medium was then replaced with a serum-free medium containing ox-LDL (50 μg/ml) for 48 h to transform THP-1 cells to foam cells. For the experiments, cells were infected with control lentivirus (LV-mock, MCS-3FLAG-SV40-puromycin), recombinant lentivirus (LV-EZH2, Ubi- MCS-3FLAG-SV40-puromycin as the vector), and DNMT1 shRNA (human shDNMT1: 5’-GATCCCCCACTGGTTCTGCGCTGGGATTCAAGAGATCCCAGC GCAGAACCAGTGTTTTTGGAAA-3’, mouse shDNMT1: 5’-GATCCCCGAACGG CATCAAGGTGAACTTCAAGAGAGTTCACCTTGATGCCGTTCTTTTTGGAAA-3’, hU6-MCS-CMV-Puromycin as the vector, GeneChem, Shanghai, China) using Polyfect-V-v infection reagent according to manufacturer’s instructions.
+ Open protocol
+ Expand
3

Targeting JAK2/STAT3 Pathway in Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
The JAK2/STAT3 inhibitor WP1066 was purchased from Selleck Chemicals (Boston, MA, USA). Antibodies for p-JAK, JAK, p-STAT3, STAT3, ATP7A were purchased from Proteintech Group (Wuhan, China). SLC30A7 overexpression plasmids and short hairpin RNA (shRNA) were produced by GV112 vector (hU6-MCS-CMV-Puromycin; GeneChem, China). On the basis of the manufacturer’s recommendation, lentiviral vectors expressing shRNA or scrambled transfected into cells. Steady cell clones transfected with shRNA expressing constructs were chosen with puromycin intervention after infection.
+ Open protocol
+ Expand
4

Lentiviral Overexpression and Knockdown of PHF19

Check if the same lab product or an alternative is used in the 5 most similar protocols
Lentivirus overexpressing PHF19 CDS (Ubi-MCS-3FLAG-SV40-puromycin) and PHF19 shRNAs (hU6-MCS-CMV-Puromycin) were produced by GeneChem (Shanghai, China) as previously described (Tao et al., 2018b (link)). The oligonucleotides synthesized for construction of PHF19 shRNA plasmids were as follows: PHF19 shRNA -1: CCGGCCTCGTGACTTTCGAAGATAACTCGAGTTATCTTCGAAAGTCACGAGGTTTTTG; PHF19 shRNA -2: CCGGCCCACCTCAAGTCATCTATCACTCGAGTGATAGATGACTTGAGGTGGGTTTTTG.
+ Open protocol
+ Expand
5

Targeting BRD and Notch Pathways in GBM

Check if the same lab product or an alternative is used in the 5 most similar protocols
For I‐BET151 (Selleckchem #S2780, US) treatment and DAPT(GSI‐IX) (Selleckchem #S2215, US) treatment, in tumor sphere formation, Western blot, limiting dilution experiment and cell viability assay, GBM initiating cells were cultured with I‐BET151 (0, 2, 4 µM) and (0, 20, 40 µM) for 24 h, respectively or DAPT (10 µM) for 24 h. U87 and U251, primary initiating cells were cultured with I‐BET151(0, 4 µM) and (0, 40 µM) for 24 h, respectively or DAPT (10 µM) for 24 h in Immunofluorescence analysis. Lentiviral shRNAs against the BRD2/BRD3/BRD4/Notch1 genes were produced by GV112 vector (hU6‐MCS‐CMV‐Puromycin; GeneChem, China). BRD4 overexpression lentivirus was prepared using GV692 vector (Ubi‐MCS‐3FLAG‐CBh‐gcGFP‐IRES‐puromycin; GeneChem). On the basis of the manufacturer's recommendation, lentiviral vectors expressing shRNA or scrambled transfected into cells. Steady cell clones transfected with shRNA expressing constructs were chosen with puromycin intervention after infection.
+ Open protocol
+ Expand
6

Silencing PLK1 and YBX1 Genes

Check if the same lab product or an alternative is used in the 5 most similar protocols
Lentiviral shRNAs against the PLK1 genes were produced by the GV112 vector (hU6-MCS-CMVPuromycin; GeneChem, China). Based on the manufacturer’s recommendation, lentiviral vectors expressing shRNA or scrambled transfected into cells. Steady cell clones transfected with shRNA-expressing constructs were chosen with puromycin intervention after infection.
The YBX1 siRNA sequence 1 was 5′-GGUUCCCACCUUACUACAU-3′ and 2 was 5′-UUCUCCGAACGUGUCACGUTT-3′. We used Lipofectamine 3000 to enhance transfection efficiency. Infection was achieved using 100 pmol siRNA and 5 μL Lipofectamine 3000 in 2 × 105 cells/mL. After transfection for 24 h, we investigated the infected cells.
+ Open protocol
+ Expand
7

Lentiviral Knockdown of USP14

Check if the same lab product or an alternative is used in the 5 most similar protocols
Lentiviruses (hU6-MCS-CMV-puromycin) expressing control shRNA or human USP14-specific shRNA (NM-005151, target sequence: CGCAGAGTTGAAATAATGGAA) were purchased from GeneChem (Shanghai, China). Cells were plated into 3.5 cm dishes. After 24 h, HitransG virus infection reagent (GeneChem, Shanghai, China) and lentivirus mixtures were dissolved in a medium and added into each well. When cells were incubated overnight, the supernatant was replaced with fresh medium and cultured for 48 h. In order to select stably-transfected cells, puromycin (Santa Cruz, CA, USA) was used at the concentration of 2 μg/ml to perform the selection.
+ Open protocol
+ Expand
8

Silencing USP7 and Overexpressing ARF4

Check if the same lab product or an alternative is used in the 5 most similar protocols
GeneChem (China) designed two shRNAs against USP7, shUSP7-1: 5' -UGUAUCUAUUGACUGCCCUTT-3 ' and shUSP7-2: 5' -UGGAUUUGUGGUUACGUUACUC-3', and a non-silencing control. Lipofectamine 3000 was used for co-transfection for 8 h, and transfection e ciency was investigated after transfection.
Lentiviral shRNA targeting the USP7 gene was generated using the GV112 vector (hU6-MCS-CMV-Puromycin; GeneChem, China). ARF4 overexpression lentivirus was prepared using the GV692 vector (Ubi-MCS-3FLAG-CBh-gcGFP-IRES-Puromycin; GeneChem). The constructed lentiviral vector was transfected into cells followed by puromycin intervention, and the transfection e ciency was identi ed by western blotting analysis to screen for stably transfected cell lines.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!