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Anti phospho s6

Manufactured by Cell Signaling Technology
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Anti-phospho-S6 is a laboratory reagent used to detect the phosphorylated form of the S6 ribosomal protein. It is a specific antibody that binds to the phosphorylated serine residue on the S6 protein, allowing for the identification and quantification of this post-translational modification.

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60 protocols using anti phospho s6

1

Cell Lysis and Protein Extraction Protocol

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For lysing cells and to extract protein RIPA buffer was used, adding a cocktail of protease and phosphatase inhibitors (Sigma-Aldrich). For the SDS-PAGE assay, a total of 20 µg/sample was loaded in the acrylamide gel. Proteins were transferred from the gel to 0.2 µm pore-size nitrocellulose membranes (Bio-Rad, Hercules, CA, USA). The membranes were then blocked for 1 h using 5% BSA (PanReac AppliChem, ITW Reagents) in 1X TBS-T (0.1% Tween20, Bio-Rad). After membrane blocking, the following antibodies were used for blotting proteins: anti-HMGA1 (ab129153; Abcam), anti-PARP1 (51-66396R; BD Bioscience, Franklin Lakes, NJ, USA), anti-cleaved Caspase 3 (#9661; Cell signaling, Danvers, MA, USA), anti-phospho-S6 (#4858; Cell signaling), anti-S6 (#2217; Cell signaling) and anti-α-tubulin (Sigma-Aldrich, T9026). Membranes were consequently incubated with Rabbit Anti-Mouse IgG–Peroxidase antibody (Sigma-Aldrich) or Goat Anti-Rabbit IgG H&L peroxidase-conjugated antibody (Abcam) secondary antibodies. For chemiluminescent detection, the HRP substrate was used. Image acquiring was performed using the ChemiDoc Imaging System (Bio-Rad). ImageJ was used to quantify protein expression levels.
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2

Immunoblotting Analysis of Signaling Proteins

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We used the following antibodies: anti-Akt (No. 9272), anti-phospho-Akt (Ser473; No. 9271), anti-S6K (No. 9202), anti-phospho-S6K (Thr389; No. 9205), anti-S6 (No. 2217), anti-phospho-S6 (Ser235/236; No. 4858), anti-4EBP1 (No. 9644), anti-phospho-4EBP1 (Thr37/46; No. 2855), anti-GSK3β (No. 12456), anti-phospho-GSK3β (Ser9; No. 5558), anti-Ampk (No. 2532), anti-phospho-Ampk (Ser9; No. 2535), anti-mouse IgG (No. 7076), and anti-rabbit IgG (No. 7074) purchased from Cell Signaling Technology (Massachusetts, United States of America). Anti-α-Tubulin (12G10) was purchased from DSHB (Iowa, United States of America). Anti- Laminin α-2 (SC-59854) was purchased from Santa Cruz Biotechnology (Texas, United States of America).
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3

Profiling and Authenticating Gastric Cancer Cell Lines

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The human gastric cancer cell lines AGS, MKN1, and GT5 were purchased from American Type Culture Collection and previously described [19 (link)–21 (link)]. Patient-derived cells GA0518 were each isolated from ascites or PDX tumors from a patient with metastatic GAC [22 , 23 (link)]. All cell lines have been profiled and authenticated, in the Cell Line Core Facility at The University of Texas MD Anderson Cancer Center, every 6 months. The cell lines were cultured in the Roswell Park Memorial Institute Medium 1640 or Dulbecco modified Eagle medium supplied with 10% heat-inactive fetal bovine serum. The cells were maintained at 37 °C in a humidified incubator containing 5% CO2. ARID1A knockdown cell lines (AGS ARID1A knock-down [KD] #1, AGS ARID1A KD #2, MKN1 ARID1A KD #1, and MKN1 ARID1A KD #2) were generated as previously described (Wang LL et al JCI 2020) and kindly provided by Dr. Guang Peng at MD Anderson Cancer Center. Chemotherapy agent 5-FU and mTOR inhibitor RAD001 were purchased from Sigma-Aldrich and Selleckchem, respectively. Antibodies used in this study were anti-ARID1A (HPA005456, Sigma-Aldrich) and anti–phospho-S6 (Cell Signaling Technology). Anti-SOX9 was purchased from Chemicon (EMD Millipore).
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4

Protein Expression Profiling by Western Blot

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Protein lysis, separation and transfer were performed as previously described (19 (link)). Blots were probed using antibodies against β-actin (Santa Cruz Biotechnology Inc.) as a housekeeping gene, anti-CD84 (Santa Cruz Biotechnology Inc.), anti–phospho AKT (Cell Signaling Technology), anti–phospho S6 (Cell Signaling Technology), and anti–PD-L1 (Cell Signaling Technology). The bands were then detected using ECL Western Blotting Substrate.
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5

Signaling Pathway Regulation Analysis

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Rapamycin, Z-IETD-FMK, Z-VAD-FMK, and LY294002 were obtained from Merck. Antibodies (Abs) specific for anti-phospho-S6K1 (#9205; 1:500 dilution), anti–phospho-S6 (#2211; 1:10,000 dilution), anti–phopho-4E-BP1 (#9459; 1:1000 dilution), anti–phospho-Akt (S473) (#9271; 1:1000 dilution), anti–phospho-Akt (T308) (#4056; 1:500 dilution), anti–phospho-ERK1/2 (#9101; 1:1000 dilution), anti-cleaved PARP (#9548; 1:1000 dilution), anti–caspase-3 (#9662; 1:1000 dilution), anti–caspase-7 (#9492; 1:1000 dilution), anti–phospho-PDK1 (Ser241) (#3061; 1:1000 dilution), anti–phospho-p38 (#9211; 1:1000 dilution), anti–β-actin (#4967; 1:10,000 dilution), anti–phospho-S6-PE (#5316; 1:50 dilution), and anti–phospho-4E-BP1-PE (#7547; 1:50 dilution) were obtained from Cell Signaling Technology; anti–caspase-8 (ALX-804-447; 1:1000 dilution) was obtained from Enzo. Flow cytometric analysis was performed on LSRFortessa X-20, and data were analyzed with FlowJo.
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6

Comprehensive Antibody Analysis Protocol

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The following antibodies were used for IP and/or western blot analysis: anti-β-actin (#4970; Cell Signalling), anti-CDK9 (sc-13130; Santa Cruz), anti-CNOT1 (14276-1-AP; Protein Tech), anti-CNOT7 (H00029883; Abnova), anti-FLAG (M2; Sigma), anti-hnRNPD (Q14103; Millipore), anti-HA (1867423; Roche), anti-IGF2BP1 (sc-21026; Santa Cruz), anti-KHSRP (ab83291; Abcam), anti-LARP7 (LaRP7-101AP; FabGennix Inc.), anti-LDLR (AF2148; BD Biosciences), anti-Myc (9E10; Roche), anti-phospho-ERK (#9101s; Cell Signalling), anti-phospho-MAPKAPK2 (#3007s; Cell Signalling), anti-phospho-RSK (sc-17033; Santa Cruz), anti-ZFP36L1 (#2119; Cell Signalling), anti-phospho-S6 (#2211; Cell Signalling).
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7

Comprehensive Protein Expression Analysis

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Western blots on whole-cell lysates were performed as previous described [21 (link)]. The antibodies used for western blot analysis included: anti-Id2 (Santa Cruz), anti-IκBα (Cell Signaling Technologies) anti-p21 (Santa Cruz), anti-AKT (Cell Signaling Technologies), anti-phospho-Akt (Cell Signaling Technologies), anti-S6 (Cell Signaling Technologies), anti-phospho-S6 (Cell Signaling Technologies), anti-mTOR (Cell Signaling Technologies), anti-ERK (Cell Signaling Technologies), anti-phospho-ERK (Cell Signaling Technologies), anti-Cdk2 (Santa Cruz), anti-phospho-Cdk2 (Cell Signaling Technologies), anti-Lamin A/C (Cell Signaling Technologies) and anti-actin (Sigma). Donkey-anti-rabbit IgG-horseradish peroxidase and Donkey-anti-mouse IgG-horseradish peroxidase (Santa Cruz) were used as secondary antibodies. The band intensities were analyzed by NIH Image J.
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8

Evaluating CP-673451's Anticancer Activities

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CP-673451 (Selleck Chemicals, Houston, TX, USA) was used in all experiments to evaluate its anticancer activities. Rabbit anti-phospho-Akt (Ser473; catalog number 4060), anti-phospho-p70S6K (Thr389; 9205), anti-phospho-S6 (Ser235/236; 2211), anti-phospho-GSK-3β (Ser9; 9336), anti-p70S6K (9202), anti-GSK-3β (9315), anti-PDGFRβ (28E1; 3169), anti-phospho-PDGRα (Tyr849)/PDGFβ (Tyr857 [C43E9]; 3170), anti-phospho-Bad (Ser136 [D25H8]; 4366), anti-β-actin (4967), and secondary horseradish peroxidase-conjugated antibody (7074) (all Cell Signaling Technology, Danvers, MA, USA) were used in Western blot analysis.
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9

Kidney Protein Analysis by Western Blot

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Kidneys were collected and homogenized in T-PER lysis buffer (Thermo Fisher Scientific) supplemented with protease (Pierce) and phosphatase inhibitors (Roche). The homogenized lysate was incubated at 4°C for 20 min and cell debris cleared by centrifugation at 12,000 g for 10 min. 50 µg of protein lysate from each kidney was analyzed by SDS-PAGE. Membranes were incubated overnight at 4°C with the following primary antibodies: anti–phospho–p-S6K (1:200; Tyr 389; 9205; Cell Signaling Technology), anti–p-S6K (1:1,000; sc-8418; Santa Cruz Biotechnology), anti–phospho-S6 (1:200; Ser235/236; 2211; Cell Signaling Technology), anti-S6 (1:500; sc-74459; Santa Cruz Biotechnology), and anti-actin (1:1,000; A4700; Sigma-Aldrich). Secondary antibodies included donkey anti–rabbit IgG–horseradish peroxidase (Sigma-Aldrich) and goat anti–mouse IgG–horseradish peroxidase (Jackson ImmunoResearch Laboratories). Blots were imaged on a C-DiGit Blot Scanner (LI-COR), and signal intensities for each protein were quantified and normalized to actin.
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10

Western Blot Antibody Conditions

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The following antibodies were used in this study: anti-Actin plus anti-mouse HRP were purchased from GenScript and Anti-phospho-S6, anti-S6, and anti-rabbit-HRP were purchased from Cell Signaling. Blotting conditions and chemiluminescence have been described [13 (link)].
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