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185 protocols using cobas e602

1

Hormonal Measurement Techniques in Longitudinal Study

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We measured plasma GH by immunoassay (IMMULITE 2000; Siemens Healthcare GmbH, Erlangen, Germany) until 2015, then Roche Modular E170 for the years 2015–2016. Later, we used a Roche Cobas® e602 (Roche Diagnostics, Basel, Switzerland).(24) Sex steroids, sex hormone binding globulin (SHBG), luteinizing hormone (LH), and follicle‐stimulating hormone (FSH) were assayed in plasma by Roche Modular E170 until 2016 and thereafter by the same platform as described earlier (Roche Cobas® e602).
Serum IGF‐1 was analyzed by immunoassay (IMMULITE 2000; Siemens Healthcare GmbH, Erlangen, Germany)(24) until November 2016, then a noncompetitive immuno luminometric method was established (IMMULITE 2000xpi from Siemens Healthineers). Over the years, different methods were used; however, at every change of method, cross‐calibration was done and, if necessary, factorial adjustments performed.
As part of the daily routine, the samples were measured consecutively, by accredited methods, at the Department of Medical Biochemistry, OUS, using standard analysis protocols.
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2

Hormonal Assay Procedures in Longitudinal Study

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Plasma GH was measured by immunoassay (IMMULITE 2000; Siemens Healthcare GmbH, Erlangen, Germany) until 2015, then Roche Modular E170 between 2015 and 2016, and since 2017 a Roche Cobas e602 has been used (Roche Diagnostics, Basel, Switzerland).24 Sex steroids, sex hormone binding globuline (SHBG), luteinizing hormone, follicle‐stimulating hormone, and cortisol were assayed in plasma by Roche Modular E170 until 2016, then by the Roche Cobas e602 platform.
Serum IGF‐1 was analyzed by immunoassay (IMMULITE 2000; Siemens Healthcare GmbH) throughout the study period.24 All analyses were performed consecutively by accredited methods at the Department of Medical Biochemistry, Oslo University Hospital, according to standard protocols for the analytical methods. Intra‐ and interassay coefficients of variation were <5% for all assays.
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3

Tumor Marker Analysis in Pleural Effusion

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PE samples were collected from all patients by standard thoracentesis within 24 h of admission. Fasting peripheral blood samples (4.0 ml) were drawn from all patients before treatment. PE and blood samples were transported to the Department of Clinical Laboratory Medicine within 1 h. CEA, CA15-3, CA125, and CA19-9 were detected by a chemiluminescence method (Cobas e602, Roche Diagnostics, Germany), and CYFRA21-1 and NSE were detected by an electrochemical luminescence method (Cobas e602, Roche Diagnostics, Germany) with commercial assay kits according to the manufacturer’s instructions. The reference interval of the aforementioned tumor markers in serum was recommended as follows: 5 ng/ml for CEA, 14 U/ml for CA15-3, 35 U/ml for CA125, 25.0 ng/ml for CA19-9, 3.3 ng/ml for CYFRA 21-1, and 16.3 ng/ml for NSE.
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4

Biochemical Analysis of Metabolic Markers

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For the biochemical analysis, venous blood samples were collected after overnight fasting of at least 10 h. The serum was separated through centrifugation and stored at −80 °C. Fasting blood glucose (FBG), triglycerides (TG), total cholesterol (TC), low-density lipoprotein cholesterol (LDL-C), high-density lipoprotein cholesterol (HDL-C), and uric acid (UA) were measured using a Hitachi Automatic Biochemical Analyzer 7180 (Hitachi, Ltd., Tokoy, Japan. Fasting insulin (FINS) was measured using a fully automatic electrochemiluminescence analyzer Roche Cobas E602 (Roche Diagnostics, Mannheim, Germany). Insulin sensitivity was assessed by homeostasis model assessment–insulin resistance (HOMA-IR), which was calculated as follows: HOMA-IR = FBG (mmol/L) × FINS (μU/mL)/22.5.
Circulating markers of inflammation include C-reactive protein concentration (CRP), tumor necrosis factor α (TNF-α), and free fatty acids (FFA). CRP was determined using an automatic electrochemiluminescence analyzer Roche Cobas C702 (Roche Diagnostics, Mannheim, Germany). TNF-α and FFA were determined using the multifunctional enzyme marker Tecan sunrise (Tecan, Mannedorf, Switzerland).
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5

Serum Antimicrobial Peptide and Vitamin D Levels

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Two milliliters of peripheral venous blood was collected from all hospitalized children before treatment and centrifuged for 10 min (3,000 r/min, centrifugal radius 70 mm), and the serum was cryopreserved in an ultra-low temperature freezer at −80 °C for future testing. Levels of antimicrobial peptide LL-37 were measured by ELISA, and human antimicrobial peptide ELISA kit was purchased from Shanghai Keshun Biotechnology Co., Ltd. Serum 25(OH)D levels were measured by the Roche electrochemical method, and relevant results were obtained from the clinical laboratory of the hospital, the analyzer is Roche Cobas E602 (Roche Diagnostics Gmbh, Germany, Manufactured 2014).
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6

Hepatitis B Biomarker Assessment Protocol

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Liver biochemical parameters were determined by a biochemistry analyzer (7600 Series; Hitachi, Tokyo, Japan). Platelet was measured by Sysmex XN-2000 (Kobe, Japan). Serum HBsAg, anti-HBs, hepatitis B e antigen (HBeAg), hepatitis B e antibody (anti-HBe), and hepatitis B core antibody (anti-HBc) were detected using an enzyme-linked immunosorbent assay kit (ARCHITECT i2000 SR; Abbott Architect, USA). Serum HBsAg were retested (Roche Cobas e602; Roche, Switzerland) when it exceeded the upper linearity limit (250 IU/mL). HBV DNA was quantified by using a real-time PCR assay (DAAN Diagnostics, Guangzhou, China). Detection limits of HBsAg, anti-HBs, HBeAg, anti-HBe, anti-HBc, and HBV DNA were 0.05 IU/mL, 10 IU/L, 1 S/CO, 1 S/CO, 1 S/CO, 500 IU/mL, respectively. The upper limit of normal (ULN) of ALT has been defined as 40 U/L for women and 50 U/L for men. The ULN of bilirubin has been defined as 21 μmol/L for women and 26 μmol/L for men. The normal range of albumin was 40-55 g/L. In addition, hepatitis B core-related antigen (HBcrAg) was not detected due to the lack of serum samples.
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7

Hepatitis B Serology Screening

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All the subjects were evaluated for serum HBsAg and anti-HBs and anti-HBc antibodies. Moreover, the subjects with positive HBsAg were also evaluated for HBeAg and anti-HBe antibodies. A 3 mL blood sample was collected and then centrifuged. This was followed by ELISA using the Roche Cobas e602 (Roche Diagnostics, Indianapolis, IN, USA). The subjects with HBsAg were determined to be seropositive at a cut-off index (COI) of HBsAg, anti-HBsAb, and anti-HBcAb of > 1.0, 10 mIU/mL and 1.0, respectively.
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8

COVID-19 Laboratory Testing Protocols

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Laboratory values were collected including complete blood count, high-sensitivity cardiac troponin I (hs-cTNI), NT-proBNP, biochemical tests, d-dimer, and procalcitonin (PCT). Complete blood count was measured with a Sysmex XN-9000 (Sysmex, Kobe, Japan) automatic hematology analyzer. Coagulation parameters, such as d-dimer, were measured with a Stago STA-R automatic blood coagulation analyzer (Stago, Paris, France). Biochemical tests, namely, alanine aminotransferase (ALT), aspartate aminotransferase (AST), total bilirubin, albumin, blood urea nitrogen (BUN), and creatinine were performed using Roche Cobas 8000 automatic biochemical analyzer (Roche, Rotkreuz, Switzerland). Hs-cTNI was measured with an Abbott ARCHITECT i2000SR chemiluminescence immunoanalyzer (Abbott Laboratories, Illinois, United States). Elevated hs-cTNI was defined as plasma levels of hs-cTNI above the 99th-percentile upper reference limit. NT-proBNP was analyzed with a Roche Cobas e602 electrochemical luminescence analyzer (Roche, Germany).
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9

Analytical Methods for Clinical Biomarkers

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Glucose was measured using Cobas 6000 (Roche Diagnostics) or with a spectrophotometric method using Radiometer ABL 800 flex Blood Gas Analyzer which uses the hexokinase method on serum. Hemoglobin (Hb) was measured with a spectrophotometry method using Radiometer ABL 800 flex Blood Gas Analyzer or using the Sysmex XN-10, using a spectrophotometric method on hemolyzed blood. Creatinine was analyzed using Cobas 6000 (Roche Diagnostics) or with a spectrophotometric method using Radiometer ABL 800 flex Blood Gas Analyzer. Details on analytical and reference ranges for these analyses can be found in the Additional file 1.
Samples of hs-cTnT were collected in lithium heparin tubes and analyzed with the Roche Cobas e602 (Roche Diagnostics). This assay has a limit of detection of 5 ng/L and a limit of blank of 3 ng/L. Coefficient of variation is < 10% at 13 ng/L and the 99th percentile cut-off point is at 14 ng/L [21 (link)].
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10

Comprehensive Metabolic and Biomarker Analysis

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Fasting peripheral blood samples were used for biochemical analysis. Serum glucose, cholesterol, triglycerides, HDL-C, urate and urine creatinine were analysed by autoanalyser on a Roche Cobas 8000. LDL cholesterol was calculated using the Friedewald equation [21 (link)]. Creatinine was analysed by the ID-MS traceable enzymatic method on the Roche Cobas 8000. Urine albumin and apoA-I (APOAT) were analysed by immunoturbidimetry. Insulin was measured by immunoassay on Roche Cobas e602. Glycated haemoglobin (HbA1c) was analysed by ion exchange HPLC on a BIO-RAD D-10. Estimated glomerular filtration rate (eGFR) was estimated with the CKD-EPI formula [22 ] and haemoglobin was measured on a Beckman DxH 800 analyser. The HOMA score was calculated from fasting insulin and glucose concentrations [23 (link)]. ApoE, plasminogen and paraoxonase 1 levels (PON1) in PEG precipitated sera were measured using an in house and commercial ELISAs from Abcam and Thermofisher, respectively.
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