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5 protocols using hif2α

1

Hypoxia Response Regulation by siRNA

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HIF-1α, HIF-2α, and negative control siRNAs were purchased from Sigma. Primary astrocytes were transfected with the indicated combinations of siRNA against HIF-1α or/and HIF-2α at a final concentration of 10 nM or negative control siRNA at a final concentration of 10 nM using LipofectAmine RNAiMAX transfection reagent (Invitrogen), according to the manufacturer’s recommendation. At 24 or 48 h after transfection, cells were exposed to hypoxic conditions for 12 or 24 h.
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2

Quantification of Hepcidin and Hypoxia Genes

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Total RNA was extracted from liver, kidney and bone marrow using the PerfectPure RNA Tissue kit (Gentra Systems, Minneapolis, MN, USA) and cDNAs were synthesized using high-capacity cDNA reverse transcription kit (Applied Biosystems, Foster City, CA, USA). Quantitative real time PCR (qPCR) assays were performed with power SYBR green PCR master mix (Applied Biosystems, Foster City, CA, USA) as previously described [15 (link),17 (link)], using the ABI Prism 7300 Sequence detection System (Applied Biosystems, Foster City, CA). Primers for quantification of Hepcidin, HIF-2 α, EPO, EPOR and β-actin (Sigma-Aldrich, Rechovot, Israel) are summarized in (Table 1). Each sample was analyzed in triplicate in individual assays. The specificity of the reaction is derived by the detection of the melting temperatures (Tms) of the amplification products immediately after the last reaction cycle. The target genes expression value was calculated by the ΔΔct method after normalization with a housekeeping gene (β-actin). Bone marrow aspirates cells were first suspended in RNA Save solution (Biological Industries, Beit Haemek, Israel). The remaining analysis was similar to the above mentioned methods.
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3

Lentiviral Knockdown of HIF Family

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HIF1β, HIF1α, HIF2α, or scramble control shRNA pLKO lentiviral vector were purchased from Sigma. Lentivirus-infected hESCs or hiPSCs were selected by puromycin, as described before (Sherman et al., 2010 (link)).
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4

Lentiviral Transduction and Adenoviral Overexpression

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Lentiviral transduction of shRNA was performed with pLKO.1 plasmids from Sigma: HIF1α (TRCN0000003809), HIF2α (TRCN0000003803), CPT1A (TRCN000036279, TRCN000036282, TRCN000036283), Snail (TRCN000063819), and DEC1 (TRCN0000013249 and TRCN0000013251). shGFP was used as a control. CPT1AM overexpression was accomplished by adenoviral transfection as described40 (link). Cells were infected at a multiplicity of infection of 20. Doxycycline-inducible CPT1AM expression was performed by cloning CPT1AM into pTRE2 and cotransfecting with pMA2640 into 786-O cells. Clonal lines were created.
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5

Silencing HIF-1α and HIF-2α in Cancer Cells

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HIFs were silenced with pLKO.1 lentiviral shRNA constructs (HIF-1α: TRCN0000003808, TRCN0000003809, TRCN0000003810; HIF2α: TRCN0000003803, TRCN0000003807, TRCN0000003804) obtained from Sigma, Inc. To produce viral supernatants, we transfected subconfluent monolayers of HEK293T cells with pLKO.1 sh-RNA, pMD2.G, and pCMV-dR8.74 (Shankar et al., 2016 (link)). Viral supernatants were collected between 24 and 72 ​h after transfection. PC-3 and 786-O cells were transduced overnight with viral supernatant (MOI ​= ​0.5) in the presence of 8 ​μg/ml polybrene for 24 ​h, and 24 ​h after replacing with fresh growth medium, cells were selected by treatment with 1.5 ​μg/ml puromycin for four days or until 100% death of the non-transduced cells.
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