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7 protocols using anti slug

1

Western Blotting Analysis of Cell Signaling Pathways

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Western blotting analysis was performed using the same procedure demonstrated previously7 (link). Briefly, the radioimmunoprecipitation assay lysis buffer (Beyotime, China) was used to extract total cell protein, which was then quantified using the bicinchoninic acid protein assay kit (Beyotime, China) and resolved on a 6–12% sodium dodecyl sulphate-polyacrylamide gel, and then incubated with relevant primary antibodies. GAPDH and histone (ZSGBBIO, China) were used as loading controls. The following primary antibodies were utilised in this research: anti-PPARδ (Proteintech), anti-CXCR4 (Proteintech, China), anti-vimentin (Proteintech), anti-GAPDH (Proteintech), anti-β-catenin (Proteintech), anti-Slug (Proteintech) and anti-N-cadherin (Proteintech). We used GSK3787 (Abcam) and XAV-939 (Abcam, UK) as PPARδ and β-catenin inhibitors, respectively. The enhanced chemiluminescence system (Bio-Rad, Hercules, EDA USA) was used to detect protein expression levels and Scion imaging software was used to capture images.
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2

Western Blot Analysis of EMT Markers

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Streptavidin-perosidase (SP) and diaminobenzidine (DAB) kits were purchased from Maixin Biotechnology Company (Fuzhou, China). The following primary antibodies were used for Western blot analysis: anti-CD36 (Santa Cruz, CA, USA), anti-E-cadherin, anti-TGF-β, anti-vimentin, anti-snail, anti-slug, anti-twist (Proteintech, IL, USA), and anti-GAPDH (Goodhere Biotechnology, Hangzhou, China).
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3

EMT Markers and Inhibitors Protocol

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Anti-PIMT (Abcam PLC, Cambridge, UK, 97446, 1:2000 dilution), anti-E-cadherin (Santa Cruz Biotechnology Inc., Santa Cruz, USA, sc-7870, 1:200 dilution), anti-vimentin (sc-7557, 1:250 dilution), anti-α tubulin (sc-5546, 1:400 dilution), anti-GRP78 (sc-1051, 1:200 dilution), anti-p53 (sc-1616, 1:200 dilution), anti-β actin (sc-32293, 1:200 dilution), anti-GAPDH (sc-25778), anti-Zeb1 (Atlas Antibodies AB, Stockholm, Sweden, HPA027524, 1:500 dilution), anti-Slug (sc-15391, 1:200 dilution), anti-Twist (Proteintech, Rosemont, IL, USA, 1:500 dilution), anti-Snail1 (Proteintech, 1:1000 dilution), anti-HIF1α (Novus Biologicals, Minneapolis, USA, NB100-479, 1:1000 dilution), and anti-HIF1α (Abcam, ab51608, 1:1000 dilution) antibodies were used in this study. Particularly, we used E-cadherin and vimentin to detect epithelial and mesenchymal properties in the cell lines. E-cadherin is a calcium-dependent transmembrane glycoprotein that mediates cell-cell adhesion in the polarized epithelium [42 (link)]. The loss of its expression is a hallmark of EMT [43 (link)]. Vimentin is a major marker of mesenchymal properties. Thapsigargin (Tg) was purchased from Wako Pure Chemical Industries, Ltd. (Osaka, Japan). Tunicamycin (Tn) was purchased from Sigma-Aldrich (St. Louis, MO, USA). LW6, an inhibitor against HIF1α, was purchased from Merck Millipore (Darmstadt, Germany).
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4

Antibody and Reagent Sources for Cell Signaling

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The following antibodies were used in this study: anti-USP33, anti-slug, and anti-twist1 antibodies were purchased from ProteinTech Group (Chicago, IL, USA); anti-CXCR4 antibody was purchased from BD Bioscience (Franklin Lakes, NJ, USA); anti-HA and anti-Flag M1 antibodies were from Sigma-Aldrich (St. Louis, MO, United States); anti-ppERK, anti-ERK, and anti-β-arrestin2 antibodies were from Cell Signaling Technology (Boston, MA, USA); anti-E-cadherin, anti-N-cadherin, anti-snai1, and anti-β-actin antibodies were purchased from Santa Cruz (Dallas, TX, USA).
N-ethylmaleimide (NEM, deubiquitinase inhibitor), SDF-1 (SDF-1α, CXCR4 agonist), AMD3100 octahydrochloride hydrate (1,1′-[1,4-Phenylenebis(methylene)]bis-1,4,8,11-tetraazacyclotetradecane octahydrochloride, CXCR4 antagonist), dynasore hydrate (3-Hydroxy-naphthalene-2-carboxylic acid (3,4-dihydroxy-benzylidene)-hydrazide hydrate, dynamin inhibitor), HA affinity beads, and Flag affinity beads were all purchased from Sigma-Aldrich.
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5

Western Blot Analysis of Signaling Proteins

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Total proteins were extracted from cells using PhosphoSafe Extraction Reagent (Novagen). Proteins were separated by 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred to 0.2-μm PVDF membranes. The membranes were blocked in 5% BSA in TBS-Tween 20 (TBS-T) for 2 h and incubated overnight at 4°C with the following primary antibodies: anti-ADCY1 (Santa Cruz), anti-phospho-MEK1/2 (Cell Signaling Technology), anti-total-MEK1/2 (Cell Signaling Technology), anti-phospho-ERK1/2 (Cell Signaling Technology), anti-total-ERK1/2 (Cell Signaling Technology), anti-phospho-CREB (Abcam), anti-total-CREB (Proteintech), anti-MITF (Abcam), anti-N-cadherin (Proteintech), anti-E-cadherin (Proteintech), anti-vimentin (Proteintech), and anti-slug (Proteintech). After washing with TBS-T for 3 times, the membranes were incubated with horseradish peroxidase (HRP)-conjugated secondary antibodies (MBL) for 1 h. Bands were visualized with ECL SelectTM Western Blotting Detection Reagent (GE Healthcare), and bands intensities were quantified using ImageJ software.
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6

Immunohistochemical Analysis of N-cadherin and Slug

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Immunohistochemistry was carried out using anti‐N‐cadherin (1:200; Proteintech) and anti‐Slug (1:200; Proteintech) antibodies. Immunohistochemical staining of the metastatic nodule sections was undertaken as previously described.1
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7

Western Blot and Co-Immunoprecipitation Analysis

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Cell lysates were prepared in lysis buffer (Beyotime Biotechnology) and 1× loading buffer (TransGen Biotech). The samples were separated by 12% SDS–PAGE (Bio-Rad) and transferred onto PVDF membranes (Immobilon-FL, Millipore) for subsequent immunoblotting. Protein expression levels were detected with specific primary antibodies and goat anti-rabbit IgG and goat anti-mouse IgG secondary antibodies (Jackson ImmunoResearch Laboratories). Anti-Snail, anti-vimentin, anti-β-actin, anti-Flag, anti-p27 mouse monoclonal antibodies and anti-UbE2E2, anti-Slug, anti-N-cadherin, anti-E-cadherin, anti-p62, anti-Ub, anti-β-tubulin, anti-Lamin B1 rabbit polyclonal antibodies were purchased from Proteintech Group, Inc. (Chicago, USA). Anti-Nrf2, anti-HO-1, anti-NQO1, anti-GCLC, anti-GCLM, and anti-LC3B rabbit polyclonal antibodies were purchased from Cell Signaling Technology (CST, USA). HRP-conjugated secondary antibodies were visualized with an enhanced chemiluminescence (ECL) system (Millipore, USA) and analyzed with Image Lab 3.0 (Bio-Rad).
Co-immunoprecipitation (co-IP) was performed using a Flag-tagged protein IP assay kit with magnetic beads (Beyotime Biotechnology, China) according to the manufacturer’s instructions.
Nuclear-Cytosol Extraction kit (Beyotime Biotechnology, China) was used for the isolation of cell components according to the manufacturer’s instructions.
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