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4 protocols using anti tgn46

1

Immunofluorescence Assay for Organelle Markers

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Immunofluorescence studies were carried out as previously described [24] (link). Briefly, cells grown overnight on 24-well cover glasses (Menzel, 12 mm) were treated with Cy2/Cy3-labeled MOA in FCS-containing medium and fixed in 4% paraformaldehyde (PFA) at 4 °C for 10 min. Cells were washed and incubated with NH4Cl at room temperature for 15 min before being permeabilized with PBS containing 0.02% saponin and 0.2% bovine serum albumin (BSA). Cells were stained with either anti-EEA1 (1:50, BD Transduction Laboratories), anti-Calnexin (1:100, Enzo Life Science), anti-CTR 433 (1:100, kind gift of Michel Bornens, Curie Institut), anti-Giantin (1:100, Abcam), anti-TGN46 (1:100, Sigma Aldrich), anti-Transferrin receptor (TfR, 1:100, Life Technologies), anti-Rab11 (1:100, Cell Signaling), anti-Lamp1 (1:200, BD PharMingen), anti-Rab7 (1:100, Santa Cruz Biotech) or anti-β1 integrin (1:100, R&D Systems) antibodies diluted in permeabilization buffer, followed by either donkey anti-mouse Cy3-labeled secondary antibody (1:100, Jackson ImmunoResearch), donkey anti-rabbit Cy3-labeled secondary antibody (1:100, Jackson ImmunoResearch) or donkey anti-goat Cy3-labeled secondary antibody (1:100, Jackson ImmunoResearch) diluted in permeabilization buffer. Nuclei were stained using DAPI (300 nM, Life Technologies).
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2

Immunofluorescence Imaging of Cellular Markers

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Cell fixation and blocking were performed according to manufacturer instructions. Cells were incubated with antibodies (anti-p21, Cell Signaling Technology (Danvers, MA); anti-p16, Abcam (Cambridge, MA); anti-phospho-p38 MAPK (Thr180/Tyr182), Cell Signaling Technology; anti-γH2AX, Cell Signaling Technology; anti-GM130, BD Bioscience, Clontech, Palo Alto, CA; anti-TGN46, Sigma, St Louis, MO) and with Alexa Fluor 555-labeled secondary antibody F(ab’) fragment (Life Technologies). After washing the cells with PBS, cells were incubated with 1 μg/mL Hoechst 33342 solution for 30 min. Each well was imaged by using IN Cell Analyzer 1000, analyzed by Developer, and visualized by Spotfire DecisionSite Client 8.2 as described above.
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3

Fluorescence Microscopy Reagents and Cells

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RPMI, HBSS, DMEM, EMEM, Trypsin-EDTA and Fetal Bovine Serum (FBS) were purchased from Wisent (Saint-Jean-Baptiste, Canada). Cy3 and Cy5 labeled DNA oligomers were ordered from IDT (Coralville, Iowa). #1.5 thickness round cover slips and 16% paraformaldehyde (PFA) were purchased from Electron Microscopy Supplies (Hatfield, Pennsylvania). HEK 293 and HeLa cells were purchased from ATCC (Manassas, Virginia), SN56 cells were a kind gift from Jane Rylett (University of Western Ontario, Canada). Lipofectamine 2000, Alexa Fluor-labeled secondary Fab antibodies and anti-Golgin97, were purchased form Life Technologies (Burlington, Canada). Dylight-labeled secondary Fab antibodies were purchased from Cedarlane (Burlington, Canada). Cysteamine, mouse anti-HA antibody, rabbit anti-FLAG antibody, Isoproterenol, dibutyrl cyclic AMP, Bovine Serum Albumin (BSA), anti-AP-1γ, and anti-TGN46 were purchased from Sigma-Aldrich (Oakville, Canada). Rat anti-LAMP1 antibody was purchased from the Developmental Studies Hybridoma Bank (Iowa City, Iowa). PolyJet was purchased from Frogga Bio (North York, Canada). All other chemicals were purchased from ThermoFisher (Toronto, Canada). Matlab software was purchased from MathWorks (Natick, Massachusetts). Prism software was purchased from Graphad (La Jolla, California).
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4

Parkin Localization and Aggregation Assays

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NAT1 R64W and WT were cloned into p3XFLAG-CMV7.1 (Sigma) vectors and expressed as FLAG-tagged proteins22 (link). Myc-Parkin R42P plasmid was provided by Dr. Ted Dawson (The Johns Hopkins University School of Medicine) and untagged Parkin R42P and Parkin fused at the C-terminal end to the Sec61β transmembrane region (amino acids 71–91) cloned into pCDNA3.1 vectors. BFP-Sec61β, mCherry-Sec61β and mCherry-Rab7 were kindly provided by Dr. Gia Voeltz (University of Colorado Boulder). EGFP was amplified from pIRES2-EGFP (Clontech) and fused at the N-terminus to FLAG-tagged NAT1 R64W or WT, or Parkin constructs. Plasmids for Vimentin, LC3B, Ambra1 and ubiquitin were purchased from Addgene or the DNASU plasmid repository and sub-cloned into BFP-Sec61β mCherry-Rab7 or p3XFLAG-CMV7.1 vectors.
Antibodies used in this study include anti-FLAG, anti-Parkin, anti-Calnexin, anti-TGN46, and anti-GAPDH from Sigma; anti-β-actin, and anti-LC3B from Cell Signaling; anti-Calnexin, anti-LAMP2a and anti-Rab4 from Abcam; anti-RPS6 from Santa Cruz Biotechnology.
Chemical treatment followed the table below.
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