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33 protocols using icon afm

1

Atomic Force Microscopy Characterization

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We used for the analysis of samples an ICON AFM from Bruker, with 30 pm noise, drift rates less than 200 pm per minute and sub-nanometer resolution in z. Ultra-sharp probes were used for ultra-high resolution with a radius of curvature at the tip as low as Rc = 5 nm, assuring an estimated maximum lateral resolution Rl=0.8Rc2nm . Images were acquired in tapping mode in air setting a frequency of 0.5 Hz and a resolution of 512 × 512 pixels. Several measurements were performed for each sample setting scanning areas of 2 μm × 2 μm, 5 μm × 5 μm, 10 μm × 10 μm. Bi- and three- dimensional image elaboration was conducted using the version 1.40 of Nanoscope software (from Bruker). Force measurements and mechanical characterization of samples were performed using a scan size of 5 μm, with a ramp size of 670.0 nm and a ramp rate of 1 Hz, using an antimony n-doped silicon cantilever with spring constant of 42 N/m, (from TESPA).
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2

Kelvin Probe Force Microscopy Characterization

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Topography and surface potential images were simultaneously collected with Pt/Ir coated silicon probes (Bruker SCM-PIT-V2, resonant frequency ≈75 kHz, k ≈ 3 N·m−1) at ambient conditions using a Bruker Icon AFM employed in amplitude modulation KPFM (AM-KPFM) mode. For work function (WF) referencing and electrical grounding purposes, a polycrystalline Au electrode was thermally evaporated with a shadow mask on the flakes, before and after the molecule adsorption. The reported surface potential values are referred to the average SP of the non-treated Au electrode (0.16 ± 0.10 eV) obtained from >30 samples. The calibration of the Au WF (4.85 ± 0.09 eV) was determined on the polycrystalline Au electrodes via macroscopic Kelvin Probe (KP) at ambient conditions (Ambient Kelvin Probe Package from KP Technology Ltd, 2-mm-diameter gold tip amplifier)60 . The calibration of the KP probe was performed against a freshly cleaved HOPG surface (4.475 eV). The SPM image processing has been done on WSxM software.
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3

Quantifying Surface Morphology with AFM

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The nanometer-scale surface morphological features of the control and reacted samples were quantified by using the tapping mode on a Bruker Icon AFM. Height, amplitude, and phase images were collected simultaneously. Tap150-G (BudgetSensors) tips were used (drive frequencies were ∼150 kHz, and scan rates ranged between 0.3 and 1 Hz). For each sample, at least five areas over the basal surface were analyzed, and at each area, several images at different scales were recorded. The Nanoscope Analysis software (Version 1.40; Bruker) was used to analyze the images and calculate the area and line roughness.
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4

Nanoparticle Imaging with AFM

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Icon AFM (Bruker, Inc. Santa Barbara California) with NanoScope V controller with ringing mode add-on (NanoScience solutions, Inc., Virginia) was used to image the obtained nanoparticles.
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5

Atomic Force Microscopy Height Imaging

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The height images were measured under ambient conditions using a Bruker Icon AFM (Bruker Corporation, Billerica, MA, USA) in tapping mode. The AFM was equipped with a TESPA-V2 cantilever with a tip apex radius of 7 nm, with a resonant frequency of 320 kHz and a spring constant of 37 N/m. The AFM data were processed with Gwyddion (version 2.56) which was used to extract the single and average height profiles and export the images.
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6

Nanoscale Height Measurements Using AFM

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AFM experiments for height measurements were performed using soft cantilevers (AC240TSA-R3, Oxford Instrument Co.) with a nominal force constant of 2 N/m and resonance frequencies of 70 kHz. The free-air amplitude of the tip was calibrated with the Asylum Research software and the spring constant was captured by the thermal vibration method. Samples were imaged with a Cypher ES scanner using intermittent tapping (AC-air topography) mode. All nanowires height analyses and statistics were performed using Gwyddion and IGOR Pro software (WaveMetrics, Inc.). To check protein quality for infrared nanospectroscopy, AFM was performed using cantilevers (Arrow-NCR, Nano Worlds) with a nominal force constant of 42 N/m and a resonance frequency of 285 kHz. Samples were imaged with an Icon AFM (Bruker) using intermittent tapping (AC-air topography) mode. Liquid AFM was performed using bio-lever mini tips (BL-AC40TS, Olympus) with resonance frequency of 25 kHz in liquid and nominal force of 0.1 N/m. AFM images were processed using the Gwyddion package.
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7

Characterization of MoS2 Thin Films

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Surface coverage and thickness were measured using peak-force tapping mode in a Bruker Icon AFM using scanasyst AFM tips with a nominal tip radius of ∼2 nm and a spring constant of 0.4 N/m. Raman and PL measurements were performed using a HORIBA LabRAM HR Evolution Raman microscope with laser wavelengths of 532 nm. Raman spectra were collected with 1800 grooves per mm grating, while PL measurements were conducted with 300 grooves per mm grating. The Raman and PL maps were acquired over a 5 × 5 µm2 area. X-ray diffraction characterization of MoS2 films was carried out with a PANalytical MRD diffractometer with a 5-axis cradle. X-rays were generated in a standard Cu anode X-ray tube operated at 40 kV accelerating voltage and 45 mA filament current. Cu K line was filtered by a mirror with 1/4° slit and Ni filter on the primary beam side. On the diffracted beam side, an 0.27° parallel plate collimator with 0.04 rad Soller slits with PIXcell detector in open detector mode was employed. Samples' surface was ~2–4° away from the X-ray incidence plane such that diffraction caused by the (h k i 0) planes, to determine the in-plane epitaxial relation of the film with respect to a substrate, could be measured35 (link).
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8

Atomic Force Microscopy of PC2 Channels

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PC2 channel complexes were imaged with an ICON AFM attached to a Nano-Scope V controller (Bruker, Sta. Barbara, CA). Unless otherwise stated, samples were scanned with oxide sharpened silicon-nitride tips (DNP-S, Bruker). BLMs were scanned in either tapping or contact mode, in liquid (Fig 1c) with silicon nitride cantilevers with a spring constant of 0.06 N/m and operating frequencies for the tapping mode of 8 kHz (tip radius estimated as ~25 nm). Scanning rates varied from 0.3 to 2 Hz. One line scans in contact mode were conducted at 1–15 Hz, depending on the length of the scanned line (average resolution 100 μs).
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9

Comprehensive Characterization of CDs and AuNPs

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The size and morphology of CDs and AuNPs were characterized by a transmission electron microscopy (TEM, JEOL-2100F, Japan). Atomic force microscopy (AFM) images were obtained on Bruker ICON AFM (Bruker, MA, USA). Fourier transform infrared (FTIR) spectrum was obtained from Nicolet 6700 spectrometer (Thermo-Fisher, USA), which worked at room temperature with the ambient humidity of 45% RH. The UV absorbance spectra were determined using Synergy H1 hybrid multi-mode microplate reader (Biotek, Vermont, USA). Time-resolved fluorescence measurement was performed on FLS-1000 (Edinburgh Instruments, UK). Circular Dichroism (CD) spectra were measured using a Chirascan J-815 spectrometer (Jasco, Japan).
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10

FT-nanoDMA Mechanical Characterization Protocol

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FT-nanoDMA was built upon the base of Bruker Icon AFM. An additional piezoceramic scanner (by NPoint Inc.) was added to oscillate the sample. To record the maps of various mechanical parameters, the AFM worked in a standard indentation (single force curve) mode synchronized with the submitting and analyzing the multi-frequency signal. The data (synchronization parameters, the deflection of the cantilever and scanner vertical position) were recorded. The control of the additional scanner, synchronization with the AFM hardware was done with the help of an FPGA data acquisition and control card (by National Instruments). Scanner and cantilever oscillations were recorded with National Instruments oscilloscope card. LabView software was used to implement the control and analysis of the data. The dull AFM probes were homemade21 (link) (similar probes are commercially available through various suppliers). The other standard methods used in this work for comparison are described in the supplementary materials (Sections 1). The spring constant of the cantilever was defined by using thermal tuning (built-in option in the AFM software). The other calibration methods were described in the Supplementary Materials.
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