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35 protocols using sybr green kit

1

Quantitative Real-Time PCR Analysis

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The total RNA from tissues and cells was extracted using the Trizol reagent (AG, Beijing, China) and was reverse transcribed using the RT reagent kit (AG, Beijing, China). For mRNA, random and oligo (dT) primers were used to synthesize cDNA, and for miRNA, random and stem-loop primers were used to synthesize cDNA. The RT-qPCR assay was performed using the SYBR Green Kit (Vazyme, Nanjing, China) on the CFX96 System (Bio-Rad, Hercules, CA, USA). We applied β-actin and U6 as an internal control for the mRNA and miRNA. The quantitation data was analyzed by the 2−ΔΔCt method, and each sample was replicated three times. All primers are listed in Table S1.
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2

Thyroid RNA Expression Profiling

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Total RNA was extracted from thyroid tissues by TRIzol (T9424, Sigma, USA) and phenol-chloroform. The concentration and purity of the extracted total RNA were subsequently determined using a Nanodrop 2000C spectrophotometer (Nano- Drop Technologies, USA), and samples with A260/A280 ranging between 1.8 and 2.0 were used in the experiments. Reverse transcription reactions were carried out by HiScript III All-in-one RT SuperMix Kit (R333, Vazyme, China). RT-qPCR amplifications were performed on 7500 Real-Time PCR System (Applied Biosystems, USA) using a SYBR Green Kit (Q711, Vazyme, China) according to the manufacturer´s instructions, and β-actin gene was used as an internal reference (forward, 5´-GCCGCCAGCTCACCAT-3´ and reverse, 5´-TCGTCGCCCACATAGGAATC-3´). The specific primers are as follows: INF-γ forward, 5´-AGTGATGGCTGAACTGTCGC-3´ and reverse, 5´-ACTGGGATGCTCTTCGACCT-3´; TNF-α forward, 5´-TCTCCTTCCTGATCGTGGCA-3´ and reverse, 5´-CAGCTTGAGGGTTTGCTACAAC-3´; IL1β forward, 5´-CCAGGGACAGGATATGGAGCA-3´ and reverse, 5´-TTCAACACGCAGGACAGGTACAG-3´.
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3

Quantitative Analysis of Retinoid Receptor Gene Expression

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Total mRNA was isolated from B16 cells using TRIzol reagent according to the supplier's instruction (Invitrogen, 15596018). Expression changes of genes were performed using HiScript II One Step quantitative real‐time polymerase chain reaction (qRT‐PCR) SYBR Green Kit (Vazyme, Q221‐01) with a reaction condition of reverse transcription at 50 °C for 15 min, initial denaturation at 95 °C for 5 min, and then 40 cycles of 95 °C for 10 s and 60 °C for 30 s on an CFX Connect Real‐Time System (Bio‐Rad, Hercules, CA, USA). The data were normalized against mouse GAPDH. The primer sequences were as follows: mouse GAPDH forward primer: 5′‐AGGTCGGTGTGAACGGATTTG‐3′ and reverse primer: 5′‐ TGTAGACCATGTAGTT‐GAGGTCA‐3′; mouse RARα forward primer: 5′‐TCAGTGCCATCTGCCTCATCT‐3′ and reverse primer: 5′‐ATGCTCCGAAGGTCTGTGATCT‐3′; mouse RARβ forward primer: 5′‐CTGCTTGCCTGGACATCCTAAT‐3′ and reverse primer: 5′‐CAGTCTCGGTGTCATCC‐ATCTC‐3′; mouse RARγ forward primer: 5′‐AATGCTGGCTTCGGTCCTCT‐3′ and reverse primer:5′‐ CCTGGCGGTCTCCACAGATTA‐3′.
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4

Quantitative Analysis of Gene Expression

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Total RNA was extracted by Trizol (Takara, Beijing, China) and reverse-transcribed into cDNA according to the manufacturers' recommendations (Vazyme). Quantitative real-time PCR (qRT-PCR) was performed using a SYBR Green Kit (Vazyme) on an ABI-7500 device (Applied Biosystem). TATA-binding protein (TBP) was used as internal control. qRT-PCR primers are listed in Table S3. The extracted total RNA of SUM149-CTRL, SUM149-NICD4, MCF-7-CTRL and MCF-7-NICD4 was sequenced and analyzed at Singeron Biotechnology (Nanjing, China).
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5

Quantitative Analysis of Gene Expression

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Total RNA was extracted from 30 young adult animals using TRIzol (Invitrogen, Carlsbad, CA, USA) and quantitated using a NanoDrop spectrophotometer (Thermo, USA). First-strand cDNA was synthesized by using the ReverTra Ace qPCR RT Kit (Toyobo, Japan). Primers for genes (Supplementary Table 3) were designed using Primer Premier 5 (Premier Biosoft). act-1 was used as an internal control. The reaction mixtures were prepared according to the SYBR green kit instructions (Vazyme, China) and real-time quantitative reverse transcription PCR (RT-PCR) was performed using a LightCycler 480 II (Roche, Switzerland). The cycling protocol was: 95 °C for 2 min, followed by 40 cycles at 95 °C for 10 s, and 60 °C for 40 s. Relative expression levels were calculated using the 2−ΔΔCt method.
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6

RT-qPCR Analysis of TOP2A Expression

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Total RNA was extracted using TRIzol. This RNA was reverse transcribed using an mRNA Reverse Transcription Kit (Takara, Japan). SYBR Green Kit (Vazyme, China) was used for an RT-PCR experiment. The primer sequences were: TOP2A forward primer 5’-TAATCAGGCTCGCTTTATCTT-3’, TOP2A reverse primer 5’-TCCGAATCATATCCCCCTCT-3’; GAPDH forward primer 5’-GGAAGGACTCATGACCACAGTCC-3’; GAPDH reverse primer 5’-TCGCTGTTGAAGTCAGAGGAGACC-3’. GAPDH was used as the control. The 2−△△CT method was used to determine gene expression levels.
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7

LIF Expression Analysis by RT-PCR

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TRIzol was performed to extract total RNA. Then, RNA was reverse transcribed with mRNA Reverse Transcription Kit (Takara, Japan). RT-PCR was performed using SYBR Green Kit (Vazyme, China). The primer sequences were shown as follows: LIF forward primer 5′-CTTGGCGGCAGGAGTTGT-3′, LIF reverse primer 5′-TTGTGACATGGGTGGCGTAT-3′; GAPDH forward primer 5′-GGAAGGACTCATGACCACAGTCC-3′; GAPDH reverse primer 5′-TCGCTGTTGAAGTCAGAGGAGACC-3′. GAPDH was used as the loading control. Gene expression levels were determined by the 2-ΔΔCT method.
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8

RNA Extraction and qRT-PCR Analysis

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Trizol (Invitrogen, USA) was used to extract the RNA from tissues and cells. SYBR Green Kit (Vazyme, China) was used for qRT‐PCR according to the protocol. β‐actin was used as internal reference. Table S3 presented the primers that were used.
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9

RNA Extraction and qRT-PCR Analysis

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RNA extraction was carried out using the RNA Easy Fast Tissue/Cell Kit (TIANGEN, DP451). The concentration of cell-free total RNAs was determined using NanoDrop 2000. Subsequently, cDNA was synthesized with the ReverTra Ace qPCR RT Master Mix with gDNA remover (FSQ-301; Toyobo) kit. For quantitative reverse transcription PCR (qRT-PCR), the SYBR Green Kit (Vazyme, Nanjing, China) was employed. GAPDH served as the internal control for normalization. The specific primer sequences can be found in Table S2.
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10

RNA Extraction and qRT-PCR Analysis

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TRIzol® reagent (Invitrogen, Carlsbad, CA, USA) was used to extract the total RNA from the tissues and cells, and according to the manufacturer's instructions. The PrimeScript™ RT reagent kit (TaKaRa, Kyoto, Japan) and miRNA 1st Strand cDNA Synthesis Kit (Vazyme, Nanjing, Jiangsu, China) was used to reverse-transcribe RNA into cDNA. The quantitative RT-PCR was performed using SYBR Green Kit and miRNA Universal SYBR qPCR Master Mix (Vazyme) with StepOnePlus™ Real-Time PCR System (Thermo Fisher Scientific, Waltham, MA, USA), following the manufacturer's protocol. The relative expressions of genes were calculated using the 2-ΔΔCT method. The primers were listed in Supplementary Table 4.
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