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19 protocols using drabkin s solution

1

In vivo Angiogenesis Assay using Matrigel Plug

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For the in vivo angiogenesis assay (Matrigel plug assay), 2X105 MDA-MB-231 cells were mixed with 0.5 ml of growth factor-reduced Matrigel (Corning, Tewksbury, MA) and implanted subcutaneously into the flanks of nude mice. The following day, six mice in each group were treated with 100 µg/kg HDAC9 siRNAs or control oligonucleotides via daily subcutaneous injections between the two plugs on the back of the mice. For selective HDAC IIa inhibitor, TMP269, mice were administered with TMP269 by subcutaneous injections every other day at 15 mg/kg mice body weight between the two plugs on the back of the mice. The animals were sacrificed and the Matrigel plugs were excised 10 days after Matrigel injection. The excised plugs were homogenized and subjected to measure hemoglobin content with 100 µL of Drabkin’s solution (Sigma, St. Louis, MO) following manufactural instruction and our previous description [41 (link)].
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2

Angiogenesis Assay Using Matrigel Plug

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0.5 mL Matrigel Matrix GFR (growth factor reduced)-PRF (phenol red free) (BD Biosciences) solution was mixed with 1 μg FGF2 and subcutaneously implanted into the right flank of female C57BL/6J mice (8 weeks, n = 3). RBM-007 was administered intraperitoneally every day at doses of 1, 3, and 10 mg/kg, and Matrigel plugs were removed and photographed on day 7 post-implantation. Grading of angiogenesis was determined by the hemoglobin concentration in the Matrigel plug, using the cyanmethemoglobin method according to the manufacturer’s instructions. In brief, the Matrigel plug was macerated with an equal volume of red blood cell (RBC) lysis solution (Sigma-Aldrich) and incubated overnight on ice. The preparation samples were added to Drabkin’s solution (Sigma-Aldrich) containing 0.3% Brij-35 and incubated for 30 min at room temperature. The optical density at 540 nm (OD540) values of the samples were measured in a microplate reader, and the hemoglobin concentrations were calculated in accordance with hemoglobin standards (Sigma-Aldrich).
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3

Tumour Growth and Angiogenesis Assay in Mice

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Tumour cells, with or without TMV, were prepared as above, washed and resuspended in 100 μl of PBS. Then, cells were mixed with 400 μl of Matrigel Matrix (BD Biosciences) and injected subcutaneously into the abdominal middle line of NOD SCID mice. After 6 days mice were euthanized, Matrigel Matrix pellets were cut out and then 400 μl of Cell Recovery Solution (BD Biosciences) was added and left at 4 °C for 7 days. Then, Matrigel Matrix implants were suspended in Drabkin’s solution (Sigma-Aldrich) for 30 min, after that spun down and the content of haemoglobin was determined by measuring the absorbance (O.D.) at 540 nm in U-1800 spectrophotometer (Hitachi, Tokyo, Japan) [20 (link)]. Independently Matrigel plugs after cutting out were photographed and then fixed in formalin, paraffin embedded, serial 3 μm sections were cut and stained with hematoxylin and eosin.
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4

Quantifying Hemolysis in Blood Storage

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For the data shown in Fig. 3 EL, at time points day 0, day 14, and day 42, storage media was collected by performing double centrifugation at 2,000 × g for 10 min to remove RBCs. The supernatant was added to an equal volume of Drabkin’s solution (Sigma). Hemoglobin concentrations were determined spectrophotometrically at 540 nm. Hemolysis is determined as a percentage of lysed erythrocytes and was calculated based on an average total hemoglobin concentration of 181.6 g/L and an average hematocrit of 54% (n = 122 blood units) (SI Appendix, Table S1).
For the 20 units in the additional dataset (Fig. 4), hemolysis measurements were performed following the testing facility protocol as previously described (46 (link)), with the exception that the supernatant preparation (storage media collection) was performed as described above.
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5

Quantifying Angiogenesis in Nude Mice

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Matrigel plug assay was conducted to measure the angiogenesis as previously described [29 ]. Nude mice were purchased from the National Laboratory Animal Center (Beijing, China). Four-week-old BALB/c athymic nude mice were fed with autoclaved food and water during the experiment. All the experiments with nude mice were performed strictly in accordance with the protocol approved by the Administrative Panel on Laboratory Animal Care of Shengjing Hospital. In brief, GECs re-suspended in 400 mL of solution containing 80% Matrigel at a density of 3 × 10 [5 ] were subcutaneously injected. After 4 days, plugs were removed, weighed, photographed, and collected by dissolving in 400 μm PBS (overnight incubation at 4 °C). The content of hemoglobin (Sigma) was determined by Drabkin’s solution (Sigma) according to manufacturer’s directions.
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6

Angiogenic potential of MenSCs in Matrigel Plug Assay

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All in vivo studies were performed at the animal facility of the Universidad de los Andes (Santiago, Chile) and received approval by the ‘Universidad de Los Andes ethical committee for animal experimentation.’ In order to evaluate the angiogenic potential of MenSCs, matrigel plug assay was performed in eight-week-old NSG mice (NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ, Jackson Laboratories, Bar Harbor, ME, USA). For the matrigel plug assay, mice were randomly divided into four groups (n = 6/8 plugs per group): DMEM (as negative control), HUVEC, BM-MSCs and MenSCs. Growth factor-reduced matrigel (BD Bioscience) was mixed with (D)MEM alone (supplemented with 50 ng/ml VEGF) or 3 × 106 cells (resuspended in DMEM supplemented with 50 ng/ml VEGF), and subcutaneously injected into both flanks of mice. Fourteen days later, matrigel plugs were harvested and processed for hemoglobin quantification. In brief, the matrigel plugs were homogenized in 250 μl Brij-35 solution (Sigma), cleared by centrifugation at 5,000 g for five minutes and the supernatants were collected to measure hemoglobin content with Drabkin’s solution (Sigma) according to the manufacturer’s instruction. Student’s t-test was used to calculate statistical difference. A P value of P ≤0.05 was considered to be statistically significant.
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7

Quantifying In Vivo Angiogenesis via Matrigel Plug Assay

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The Matrigel plug assay was performed to evaluate the angiogenic response in vivo. Matrigel Growth Factor Reduced (0.45 mL, Corning) mixed with heparin (10 U/mL) and PBS or BafA-PD (500 ng/mL) were subcutaneously injected into the flanks of 8-week-old C57BL/6J mice. On day 10 post injection, mice were sacrificed, Matrigel plugs were removed, and blood vessel formation was evaluated by quantification of hemoglobin. The hemoglobin assay was performed as follows: Matrigel plugs were soaked in an equal volume of RBC lysis buffer (Sigma-Aldrich) and incubated overnight on ice. Drabkin’s solution (Sigma-Aldrich) containing 0.3% Brij-35 was added to the samples and incubated for 30 min at room temperature. The hemoglobin concentration was determined by comparing the spectral absorption at 540 nm of the sample with that of hemoglobin standards (Sigma-Aldrich).
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8

Hemolysis Quantification Protocol

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The samples were covered with PBS resulting in a surface-to-PBS ratio of 3 cm2/mL in screw-cap polypropylene tubes. Subsequently, pooled blood was added at a ratio of 1:7 and incubated at 37°C for 3 hours. During this time, the tubes were inverted carefully twice every 30 minutes. A sample of 1.8 ml was removed from the test tubes and centrifuged at 700–800 g for 15 minutes. Drabkin’s solution (Sigma, Germany) was added to the samples at equal volumes and incubated at room temperature for 15 minutes. Two aliquots of each sample were transferred to a microtiter plate and the absorbance was measured at 540 nm. All measurements were done in triplicates and catheters (ARROWg + ard Blue, Arrow international) and high density polyethylene films (RM-C, Hatano Research Institute) were used as hemolytic and non-hemolytic controls, respectively.
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9

Angiogenesis Quantification in Nude Mice

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All animal procedures were performed in accordance to the protocols approved by the Animal Care Committee of the Shengjing Hospital. Four-week-old BALB/C athymic nude mice were obtained from the National Laboratory Animal Center (Beijing, China). The animals were fed with autoclaved food and water during the study. The nude mice were divided into five groups: control group, circ-SHKBP1 (−) NC + miR-544a/miR-379 (+) NC group, circ-SHKBP1 (−) group, miR-544a/379 (+) group, and circ-SHKBP1 (−) + miR-544a/miR-379 (+) group. Angiogenesis was measured by a Matrigel plug assay as previously described.64 (link) In brief, 3 × 106 GECs in 400 μL of solution containing 80% Matrigel were subcutaneously injected. Plugs were harvested after 4 days, weighed, photographed, and dispersed in 400 μL of PBS (overnight incubation at 4°C) to collect the hemoglobin. Hemoglobin content was measured using Drabkin’s solution (Sigma) according to the manufacturer’s recommendations.
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10

Hemoglobin and Reticulocyte Monitoring in Rats

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Hemoglobin levels were monitored daily by diluting 2 μL tail-vein blood in 500 μL Drabkin's solution (Sigma Aldrich, Canada). Following 15 min of incubation in the dark, 200 μL of blood was transferred into 96-well plates (Costar, USA) in duplicate and absorbance was measured at 540 nm in a microplate reader. Values were converted to g/dL using a standard curve of rat hemoglobin (Sigma Aldrich, Canada) prepared in Drabkin's solution. All samples were assessed in duplicate. To estimate the percentages of reticulocytes in blood, 1 μL of tail-vein blood was collected in 1 mL of PBS. The cell suspensions were then stained with anti-CD71-FITC antibody (BioLegend, USA) and incubated at 4°C for 30 min. Data were acquired with an Accuri C6 (Becton Dickinson, USA) and analyzed with the FlowJo software (Tree Star). In parallel, parasitemia was measured daily in methanol fixed blood smears stained with a 10% Giemsa solution in PBS during 15 minutes.
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