The largest database of trusted experimental protocols

10 protocols using eclipse e800

1

Immunohistochemical and Immunofluorescence Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Slides were processed as previously described[14 (link), 22 (link)]. For IHC, sections were incubated with antibody specific to Synaptophysin (Sigma, 1:250) overnight at 4°C, then in goat HRP-conjugated secondary antibody (Santa Cruz Biotechnology, 1:1000). Slides were developed for 5 minutes with a Vector DAB Kit (Vector Laboratories) per manufacturer's protocol, counterstained in CAT Hematoxylin, and imaged on a Nikon Eclipse E800 upright microscope with an Olympus DP71 camera and manufacturer's software. For IF, primary antibodies against the following proteins were used: phospho-histone H3 (pHH3) (Abcam, 1:750), Ki67 (Abcam, 1:250), phospho-Akt (Ser-473), Akt and Pten (1:100, Cell Signaling) followed by Alexa Fluor 488/546/647-conjugated secondary antibodies raised in goat (Molecular Probes,1:1000). Sections were counterstained with DAPI. Imaging was performed by confocal microscopy (Leica TCS SPE/DMI4000B; Leica Application Suite software). The numbers of pHH3- and Ki67-positive cells were counted and normalized to the total number of nuclei per image.
+ Open protocol
+ Expand
2

Flea Digestive Tract Dissection and Measurement

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fleas were placed in PBS on a glass microscope slide and dissected with a set of fine forceps. The flea exoskeleton was removed and an 18 x 18 mm glass cover slip was gently placed over the top of the digestive tract. Images of flea digestive tracts were obtained using a Nikon Eclipse E800 microscope with an Olympus DP72 camera and cellSens imaging software. To calculate an esophagus:proventriculus (E/PV) width ratio, the width of the base of the esophagus was measured above the proventricular spines, where the musculature ends, and the proventriculus was measured at its widest position, near the midpoint of the valve.
+ Open protocol
+ Expand
3

Retinal and RPE Whole-Mount Preparation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Eyes were enucleated and placed in cold Hanks' Balanced Salt Solution buffered with 25 mM HEPES (pH 7.2), after which the cornea and lens were removed and the retina and RPE were carefully isolated. Relaxing cuts were made in the retinal margins. The whole retinas or RPE were flattened onto a black filter membrane. Whole-mounted retinas were fixed in 4% paraformaldehyde in PBS at 4ºC for 2 h, and were rinsed in PBS. Intrinsic fluorescence or labeling in retinal and RPE whole-mounts was imaged using either a Nikon Eclipse E800 (Tokyo, Japan), an Olympus IX70, or an Olympus MVX10 (Olympus USA, Center Valley, Pennsylvania) microscope.
+ Open protocol
+ Expand
4

Histological and Immunohistochemical Analysis of Uterine Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
One uterine horn per mouse was fixed overnight in 10% neutral buffered formalin, processed in increasing concentrations of ethanol, and paraffin embedded. Tissues sections (5μm) were processed for histological analysis. Sections were stained with Hematoxylin and Eosin and analyzed by two pathologists blinded to the experimental exposures. For immunohistochemistry, sections were incubated with antibody specific to phospho-histone H3 (pHH3), alpha smooth muscle actin (αSMA) and cytokeratin 8 (CK8) (S1 Table), then with goat HRP-conjugated secondary antibody (Santa Cruz Biotechnology, 1:1000). Slides were developed for 5 minutes with a Vector DAB Kit (Vector Laboratories) per manufacturer's protocol, counterstained in CAT Hematoxylin. Representative images were taken on a Nikon Eclipse E800 upright microscope with an Olympus DP71 camera and manufacturer's software. We used primary antibody against pHH3 for immunofluorescence (S1 Table) followed by goat Alexa Fluor 488—conjugated secondary antibody (Molecular Probes, 1:1000). Sections were counterstained with DAPI imaged by confocal microscopy (Leica TCS SPE/DMI4000B; Leica Application Suite software).
+ Open protocol
+ Expand
5

Quantitative Analysis of Vascular and Neuronal Tissue in Histological Sections

Check if the same lab product or an alternative is used in the 5 most similar protocols
For analysis, H&E slides were imaged with a Nikon eclipse E800 microscope at 20× using Olympus cellSens Entry program. Images that contained vessels or nerve axons on multiple adjacent images were stitched together using Photoshop (Adobe Systems, Inc., San Jose, CA, USA). At least three slits were imaged for each slit size group. Images (or stitched images) for each slit were analyzed with a custom MATLAB (MathWorks, Inc., Natick, MA, USA) code for manual tracing of blood vessels and nerve tissue within each image and calculations of area and lengths of major and minor axes of the tracings. Vessels were identified by three criteria: (1) hollow lumen, (2) endothelial cell lining, and (3) luminal erythrocytes.21 (link)–23 (link, link) Nerve axonal tissue was identified by characteristic morphology: wavy bundles of eosinophilic fibers associated with spindled Schwann cells. Identifications and tracings were confirmed by a blinded dermatopathologist. The vessel (or nerve) area percentage or count was calculated as total vessel (or nerve) area or count divided by total slit tissue area. Circularity of vessels (or nerves) was defined as the length of the minor axis divided by the length of the major axis.
+ Open protocol
+ Expand
6

Tissue Fixation and Immunohistochemistry

Check if the same lab product or an alternative is used in the 5 most similar protocols
Prefer solution (Anatech Ltd, Battle Creek, MI) was used to fix the mouse eyes for 15 min at room temperature, followed by 70% ethanol overnight. The tissue was paraffin-embedded, and 5-μm-thick sections were cut and mounted onto slides. These sections were subjected to immunohistochemistry. A Nikon Eclipse E800 microscope and Olympus MVX10 macroscopic imaging system for high resolution equipped with a digital camera was used to examine the antibody-labeled complexes. Metamorph (Universal Imaging, West Chester, PA) image analysis software was used to capture images under identical microscope and camera settings.
+ Open protocol
+ Expand
7

Immunofluorescence Staining of PMP22 and Ubiquitin

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells on coverslips were fixed with 4% paraformaldehyde for 10 min and permeabilized with ice-cold 100% methanol (5 min) at −20℃, or 0.2% Triton X-100 (for LAMP1 and Rab7 staining) at room temperature, followed by blocking with 5% normal goat serum in phosphate-buffered saline (PBS), for 1 hr (Fortun et al., 2007 (link)). After an overnight incubation with primary antibodies (Table 1) at 4℃, samples were treated with Alexa Fluor 594 (red) or Alexa Fluor 488 (green) anti-rabbit, anti-mouse, or anti-rat secondary antibodies (Molecular Probes, Eugene, OR) for 2 hr at room temperature. Nuclei were visualized with Hoechst dye. Samples without primary antibodies were processed in parallel as negative controls. After washing in PBS, coverslips were mounted using the Prolong Antifade kit (Molecular Probes). Images were acquired with a SPOT digital camera attached to a Nikon Eclipse E800 or an Olympus DSU spinning disc confocal (Tokyo, Japan) microscope. Images were processed for printing using Photoshop 5.5 (Adobe Systems, San Jose, CA). Cells containing PMP22- and ubiquitin-positive aggregates (>1 µm in diameter), and the total number of cells (Hoechst positive), were counted in 8 to 10 random microscopic fields (0.1 mm2) using ImageJ software (NIH) and graphed as percentage of total cells (Fortun et al., 2007 (link)).
+ Open protocol
+ Expand
8

Chromosome 8 and 12 DNA FISH

Check if the same lab product or an alternative is used in the 5 most similar protocols
DNA fluorescence in situ hybridization (FISH) probes for the centromeric α‐satellite regions of chromosome 8 and chromosome 12 were purchased from Cytocell (LPE008G and LPE012R). DNA FISH was performed according to the manufacturer's instructions. Briefly, cells were incubated in 75 mM KCl for 15 min at 37°C, fixed in 3:1 methanol:acetic acid, and dropped onto a slide. Slides were immersed in 2X saline‐sodium citrate (SSC) buffer and dehydrated in an ethanol series (70%, 85%, 100%). Slide samples and probes were denatured at 75°C for 2 min, and hybridization took place overnight at 37°C. After hybridization slides were washed in 0.25X SSC at 72°, then in 2X SSC with 0.05% Tween‐20 and DAPI at RT. Coverslips were mounted with Vectashield. Interphase cells were imaged on a Nikon Eclipse E800 with an Olympus DP controller with a ×20 lens.
+ Open protocol
+ Expand
9

Immunohistochemical Analysis of Peripheral Nerves

Check if the same lab product or an alternative is used in the 5 most similar protocols
Explant cultures were fixed in 4% paraformaldehyde
(EMS, Hatfield, PA) and permeabilized in 100% ice-cold methanol (Fisher
Scientific, Hampton, NH). After blocking with 5% normal goat serum,
samples were incubated with anti-MBP antibodies, overnight at 4 °C.
Bound antibodies were detected with Alexa Fluor 488 goat antirat IgG
(Molecular Probes, Eugene, OR). Coverslips were mounted using the
Prolong Antifade kit (Molecular Probes). Proximal regions of sciatic
nerves were sectioned (5 μm thickness) and processed for immunostaining
with anti-PMP22 antibodies, as described.13 (link) AlexaFluor 594-conjugated goat antirabbit antibodies were used to
detect the bound primary antibodies. Samples which were processed
in parallel without incubation with primary antibodies served as the
negative controls. Images were obtained using a SPOT digital camera
(Diagnostic Instrumentals, Sterling Heights, MI), with a Nikon Eclipse
E800 or an Olympus DSU spinning disc confocal (Tokyo, Japan) microscope,
using identical exposure settings. Images were processed using Photoshop
(Adobe Systems).
+ Open protocol
+ Expand
10

Immunofluorescence Labeling and Imaging

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells on coverslips in 12‐well plates were washed once with phosphate‐buffered saline (PBS) and fixed with 4% paraformaldehyde (PFA) in PBS for 10 min. Cells were permeabilized with PBS + 0.5% Triton X‐100, washed in PBS + 0.1% Triton X‐100, and blocked in 5% bovine serum albumin (BSA) in PBS + 0.1% Triton X‐100. Coverslips were incubated with primary antibodies (see Section 2.2) at 1:500 overnight at 4°C in blocking solution. After washing, the coverslips were incubated with secondary antibody (Alexa488 conjugated anti‐rabbit or anti‐mouse; Jackson Laboratories) at 1:500 for 1 h at RT. Nuclei were stained with 4′,6‐diamidino‐2‐phenylindole (DAPI) and coverslips were mounted with Vectashield Mounting Medium (Vector Laboratories). DNA damage foci were imaged on a Nikon Eclipse E800 with an Olympus DP controller with a ×20 lens. At least three fields of view were chosen from which to count foci. Foci were counted using the Find Maxima feature of ImageJ with a noise threshold of 15. Anaphase defects were imaged on a Nikon Eclipse Ti with a ×60 oil immersion lens. Anaphase defects images in Figure 2a are Max Intensity Projections of 5‐7 z‐stack slices, 0.25 µm step size.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!