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9 protocols using rabbit anti ki67 ab15580

1

Antibody Reagents for Protein Analysis

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Affinity-purified rabbit anti-11βHSD2 (catalog no. BHSD22-A) was purchased from Alpha Diagnostic International; rabbit anti-murine COX-2 (catalog no. 160106) was from Cayman Chemicals; rabbit anti-CHOP (catalog no. 2895), rabbit anti-cleaved caspase-3 (catalog no. 9661), rabbit anti-p-ERK (T202/Tyr204, catalog no. 4370), p-mTOR (Ser2448, catalog no 2976), p-PERK (Thr980, Catalog no 3179) and p-eIF2α (Ser51, catalog no 9721) were from Cell Signaling; rabbit anti-cyclin D1 (catalog no. SC-753) was from Santa Cruz Biotechnology; mouse anti-mannose receptor (MR, CD206, catalog no.MAB25341) was from R&D; rabbit anti-Ki67 (ab15580) was from Abcam.
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2

Antibody Library for Cell Signaling Research

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The following antibodies were obtained from Cell Signaling Technology (Beverly, MA): rabbit anti-CDK2 (2546), mouse anti-Cyclin B1 (4135), and rabbit anti-PCNA (13110). The following antibodies were purchased from Santa Cruz Biotechnology (Santa Cruz, CA): mouse anti-p16 (sc-74400), mouse anti-GAPDH (sc-32233), mouse anti-β-actin (sc-47778), mouse anti-E2F-1 (sc-251), rabbit anti-HBP1 (sc-25390), mouse anti-Bmi-1(sc-13519), and mouse anti-Ets-1 (sc-55581). Rabbit anti-SOD1 (ab16831), rabbit anti-SOD2 (ab13533), and rabbit anti-Ki-67 (ab15580) were purchased from Abcam (Cambridge, MA). Mouse anti-HP1γ antibody (05-690) and rabbit anti-H3K9me3 (07-442) antibody were purchased from EMD Millipore (Billerica, MA). Other chemicals and organic solvents of the highest available grade were obtained from Sigma-Aldrich. AMPKα1−/− and AMPKα2−/− mice were described elsewhere (Jorgensen et al., 2004 (link); Viollet et al., 2003 (link)). Mice were handled in accordance with study protocols approved by the Institutional Animal Care and Use Committee of Georgia State University (Atlanta, GA).
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3

Immunofluorescence Staining of Cell Adhesion

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Antibodies used were Hic-5, 611164; FAK, 610081; ERK1/2, 610124 (BD Biosciences, Franklin Lakes, NJ, USA); α-SMA, A2547; Fibronectin, F3648; Tubulin, T9026; DAPI, 10236276001 (Sigma Aldrich, St. Louis, MO, USA); phospho-MLC2, 3671; phospho-ERK1/2, 4307 (Cell Signaling Technologies, Danvers, MA, USA); rabbit anti-Ki67, ab15580 (Abcam, Cambridge, MA, USA); FAK pY397, 700255 (ThermoFisher, Waltham, MA, USA); paxillin, ss-5574 (Santa Cruz Biotechnology, Santa Cruz, CA, USA); Cytokeratin-14, PRB-155P (Covance, Princeton, NJ, USA); Rhodamine Phalloidin (Invitrogen, Carlsbad, CA, USA)
The EPCAM antibody, developed by A.G., Farr, was obtained from the Developmental Studies Hybridoma Bank, created by the NICHD of the NIH and maintained at The University of Iowa, Department of Biology, Iowa City, IA 52242
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4

Comprehensive immunohistochemical analysis

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Primary antibodies were obtained from the following sources: rabbit anti-Cep192 [82 (link)] (1 : 1000), rabbit anti-keratin 5 ab52635 (Abcam, 1 : 1000), chicken anti-keratin 5 #905901 (BioLegend, 1 : 1000), rabbit anti-keratin 10 ab76318 (Abcam, 1 : 1000), rabbit anti-keratin 6 #905701 (BioLegend, 1 : 1000), rabbit anti-cKit ab5506 (Abcam), rabbit anti-Ki67 ab15580 (Abcam, 1 : 500), mouse anti-γ-tubulin monoclonal GTU-88 (Sigma, 1 : 200), rabbit anti-γ-tubulin T3559 (Sigma, 1 : 500), rat anti-PLK4 [78 (link)] (1 : 1000), mouse anti-centrin2/3 S3332 (Santa Cruz Biotechnology, 1 : 500), guinea-pig anti-insulin ab7842 (Abcam, 1 : 50), mouse monoclonal anti-glucagon ab10988 (Abcam, 1 : 200), mouse monoclonal anti-acetylated-tubulin clone 6-11B-1 (Sigma, 1 : 200), mouse anti-MITF ab80651 (Abcam, 1 : 200), rabbit anti-DCT ab74073 (Abcam, 1 : 200), mouse anti-E-cadherin clone ECDD-2 (Invitrogen, 1 : 200), rat anti-mouse-cKIT clone 2B8 (Biolegend). Secondary antibodies used (1 : 2000 for immunofluorescence) were conjugated with Alexa 488, Alexa 568 or Alexa 647 (Invitrogen) and had minimal cross-reactivity to other species.
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5

Investigating Cell Proliferation Regulation

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Andro (365645) and ammonium pyrrolidinedithiocarbamate (APDC; NF-κB inhibitor, P8765) were obtained from Sigma-Aldrich (St. Louis, MO, United States) and were dissolved in dimethyl sulfoxide (DMSO). Cell Counting Kit-8 (CCK-8) was purchased from Beyotime (Shanghai, China). Rabbit anti-Ki67 (ab15580) was purchased from Abcam (Cambridge, MA, United States), rabbit anti-GAPDH (2118) was purchased from Cell Signaling Technology, Inc. (Danvers, MA, United States), rabbit anti-PDCD4 (BM5208) and rabbit anti-EGN (endoglin, BA2227) were both from Boster (Wuhan, China), and rabbit anti-NF-κB p65 (abs131170) and rabbit anti-phospho-NF-κB p65 (Ser536, abs130624) were purchased from Absin (Shanghai, China). All the miRNA mimics and inhibitors and the negative control (NC) RNAs were purchased from RiboBio Co., Ltd. (Guangzhou, China). All the primers were synthesized by Sangon Biotech Co., Ltd. (Shanghai, China).
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6

Immunofluorescence Staining of Cell Adhesion

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Antibodies used were Hic-5, 611164; FAK, 610081; ERK1/2, 610124 (BD Biosciences, Franklin Lakes, NJ, USA); α-SMA, A2547; Fibronectin, F3648; Tubulin, T9026; DAPI, 10236276001 (Sigma Aldrich, St. Louis, MO, USA); phospho-MLC2, 3671; phospho-ERK1/2, 4307 (Cell Signaling Technologies, Danvers, MA, USA); rabbit anti-Ki67, ab15580 (Abcam, Cambridge, MA, USA); FAK pY397, 700255 (ThermoFisher, Waltham, MA, USA); paxillin, ss-5574 (Santa Cruz Biotechnology, Santa Cruz, CA, USA); Cytokeratin-14, PRB-155P (Covance, Princeton, NJ, USA); Rhodamine Phalloidin (Invitrogen, Carlsbad, CA, USA)
The EPCAM antibody, developed by A.G., Farr, was obtained from the Developmental Studies Hybridoma Bank, created by the NICHD of the NIH and maintained at The University of Iowa, Department of Biology, Iowa City, IA 52242
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7

Investigating NF-κB Signaling Pathways

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The following antibodies were obtained from Cell Signaling Technology (Beverly, MA): rabbit anti-CDK2 (2546), rabbit anti-pCDK2-T160 (2561), rabbit anti-pp100-S866/870 (4810), rabbit anti-pIĸKα/β (2078), rabbit anti-IĸKα (2682), rabbit anti-NF-ĸB2 p100/p52 (4882), rabbit anti-NIK (4994), rabbit anti-β-TrCP (D13F10) (4394), and rabbit anti-PCNA (13110). β-TrCP siRNA (sc-37179), p52 siRNA (m) (sc-36043), CDK2 shRNA (m) lentiviral particles (sc-29260-V), NFκB p52 shRNA (m) lentiviral particles (sc-36043-V), goat anti-pNIK-T559 (sc-12957), rabbit anti-Epo (sc-7956), mouse anti-GAPDH (sc-32233), mouse anti-β-actin (sc-47778), were purchased from Santa Cruz Biotechnology (Santa Cruz, CA). Rabbit anti-Epo (ab65394) and rabbit anti-Ki-67 (ab15580) were purchased from Abcam (Cambridge, MA). Other chemicals and organic solvents of the highest available grade were obtained from Sigma-Aldrich. AMPKα1-KO and AMPKα2-KO mice were described elsewhere [55 (link), 56 (link)]. Mice were handled in accordance with study protocols approved by the Institutional Animal Care and Use Committee of University of Oklahoma Health Sciences Center (Oklahoma City, OK).
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8

Evaluation of Cellular Stress Pathways

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Rabbit anti-SQSTM1/P62 (D5E2), rabbit anti-LC3A/B (D3U4C), rabbit anti-mTOR (7C10), rabbit anti-p-mTOR (Ser2448), rabbit anti-p-SAPK/JNK (Thr183/Thr185), rabbit anti-SAPK/JNK (56G8), rabbit anti-cyclinD1 (96G2), rabbit anti-p-ERK (Thr202/Thr204), rabbit anti-ERK (137F5), rabbit anti-p-P38 (Thr180/Tyr12), rabbit anti-P38 (D13E1), rabbit anti-p-AKT (Ser473, D9E), and rabbit anti-AKT (C67E7) were from Cell Signaling (Danvers, MA, USA). Rabbit anti-GRP78 (ab21685), rabbit anti-IRE1 (ab37073), rabbit anti-NCX1 (ab151608), and rabbit anti-Ki67 (ab15580) were from Abcam (Cambridge, MA, USA). Mouse anti-GAPDH was from Beyotime Biotechnology (Nanjing, China). NCX1 inhibitor KB-R7943 (Sigma, St Louis, MO, USA, K4144-25MG) was dissolved in DMSO at 10 mM. Autophagy inhibitor 3-methyladenine (Sigma, M9281-100MG) was dissolved in medical injectable water at 50 mM. Chloroquine (Sigma, C6628-25G) was dissolved in medical injectable water at 10 mM. Wortmannin (Beyotime Biotechnology, Nanjing, China) and SP600125 (Sigma, S5567-10MG) were dissolved in DMSO at 10 mM.
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9

Cerebral Infarct and Ischemic Penumbra Analysis

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Mice at different time-points of reperfusion were euthanized by perfusion with ice-cold saline, and the brains rapidly dissected and stored at −80 °C. As we previously described [5 (link)], TTC staining was performed to demarcate the cerebral infarct and ischemic penumbra. Immunofluorescent (IF) studies were performed as previously described [30 (link)] on 10-μm-thick frozen coronal sections. The following monoclonal antibodies from BD Pharmingen (La Jolla, CA, USA) were used in this study: FITC-conjugated rat anti-mouse CD31 (PECAM-1) (clone MEC13.3; 1:100) and PE-conjugated rat anti-mouse α5(CD49e) (clone 5H10-27; 1:100). The rabbit anti-fibronectin (F3648) was purchased from Sigma (St. Louis, MO, USA; 1:400). The rabbit anti-Ki67 (ab15580) was obtained from Abcam (Cambridge, MA, USA; 1:800). The rabbit anti-CD31 (PECAM-1) (250590) antibody was obtained from Abbiotec (San Diego, CA, USA; 1:200). The rabbit anti-integrin β3 (MBS8508681) antibody was purchased from MyBioSource (San Diego, CA, USA; 1:200). The Alexa Fluor 488-conjugated goat anti-rat and anti-rabbit, and Cy-3-conjugated goat anti-rat and anti-rabbit secondary antibodies were obtained from EarthOx (Millbrae, CA, USA).
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