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14 protocols using bx51 dsu

1

Microscopic Observation of Chloroplasts

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The cotyledons of 12-days-old seedlings of different lines were used for microscopic observation, as described in a previous report (Zhang et al., 2012 (link)). The chloroplasts/plastids in living leaf tissues were examined using a fluorescence microscope (DSU-BX51; Olympus Corp.) under a 100× objective lens with oil. For observation of Arabidopsis seeds, autofluorescence from the intact seeds was monitored directly under a microscope (DSU-BX51; Olympus Corp.) with a filter set (U-MWIB2). Corresponding bright-field photographs were recorded simultaneously.
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2

Placental OGT and HCF-1 Colocalization

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For double immunofluorescence analyses of OGT and HCF-1, we prepared placental tissues sliced in 5μm. Sectioned tissues were incubated in blocking solution (2% normal donkey serum, 0.5% Triton X-100, 0.05% sodium azide in 0.05M PBS, pH 7.4) for 1 h, followed by 4°C overnight incubation with mixed primary antibodies (anti-OGT plus anti-HCF1). After several washes in 0.1 M PBS, fluorescent labeling secondary antibodies [goat anti-Mouse IgG conjugated to Alexa Fluor 488 (Thermo, A-11029) or donkey anti-Rabbit IgG conjugated to Alexa Fluor 594 (Thermo, A-21207)] were applied, and sections were mounted with Mounting Medium including DAPI (Invitrogen, CA). Digital images were taken by fluorescence microscope (BX51-DSU; Olympus, Tokyo).
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3

Apoptosis Quantification in Cisplatin-Treated HeLa Cells

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shCTL and shOGT HeLa cells were seeded into 24-well plates at 2 × 104 cells per well, then grown for 16 h. Next, cells were treated with 20 μM cisplatin for 24 h, washed with phosphate-buffered saline (PBS), fixed with cold 4% paraformaldehyde, and permeabilised for 2 min with 0.5% Triton X-100 and 0.05% sodium azide in 0.05 M PBS on ice. Apoptotic cells were measured using an in situ cell death detection kit, stained with TMR red (Roche Applied Science, Mannheim, Germany) for 15 min, and mounted on slides using ProLong Gold Antifade reagent (Invitrogen, Carlsbad, CA, USA) for a nuclear stain. All images were taken using a fluorescence microscope (BX51- DSU; Olympus, Tokyo).
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4

Quantifying Brain Apoptosis via TUNEL

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TUNEL analysis was performed to measure the degree of tissue apoptosis using an in situ cell death detection kit (Roche Molecular Biochemicals, Mannheim, Germany), according to the manufacturer's instructions. Frozen free-floating brain sections were visualized with a confocal microscope (BX51-DSU, Olympus) and digital images captured and documented. TUNEL-positive cells were manually counted in the CA3 region (100×100 µm) in three sections (n=4 per group). The cells were counted by observers blinded to the treatment conditions using 20× objectives.
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5

TUNEL Assay for Apoptosis Quantification

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One of the recognized marker events of apoptosis is DNA fragmentation. The specific DNA fragments can be measured using a terminal deoxynucleotidyl transferase (TdT) dUTP nick end labeling (TUNEL) assay. The ARPE-19 cells were seeded on coverslips at a density of 2 × 105 cells/well and treated as indicated in Section 2.3. Thereafter, the cells were fixed with 4% (w/v) paraformaldehyde. Then, apoptosis was determined using TUNEL assay kit according to the manufacturer’s instructions. Apoptotic cells were identified and photographed using a florescence microscope (BX51-DSU; Olympus, Tokyo, Japan) at × 200 magnification.
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6

Immunofluorescence Staining of Cultured Cells

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Cultured cells on coverslips were fixed with 4% (w/v) paraformaldehyde for 30 min and then permeabilized with PBS containing 0.1% Triton X-100 for 20 min at room temperature. Cells were blocked with 5% horse serum in PBS for 1 h and then incubated with primary antibodies overnight at 4  C. After washing with PBS, cells were incubated with FITC or TRITC-conjugated secondary antibodies (1:50 in PBS) at room temperature for 90 min. Slides were washed twice with PBS for 5 min, and coverslips were mounted using mounting medium containing DAPI. Images were captured by fluorescent microscopy (BX51-DSU; Olympus, Tokyo).
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7

Quantifying Cell Death in CA3 Region

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TUNEL was performed on frozen tissue sections using an in situ cell death detection kit (Roche Molecular Biochemicals, Mannheim, Germany) according to the manufacturer's protocol. The sections were examined under a microscope (BX51-DSU, Olympus, Tokyo, Japan), and digital images were captured. For each treatment group, TUNEL-positive cells were manually counted in the CA3 region (50×50 µm) in three sections (n=5–7 mice/group). The cells were counted by observers who were blinded to the treatment conditions.
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8

Immunofluorescence Staining of Brain Tissue

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Free-floating brain tissue sections were incubated with two antibodies: mouse anti-glial fibrillary acidic protein (GFAP, Santa Cruz Biotechnology, Dallas, TX, USA; 1:500) antibody; goat anti-LCN2 (Abcam, Cambridge, UK; 1:200) antibody; rabbit anti-Iba-1 (Wako Pure Chemical Industry Richmond, VA, USA; 1:200). Samples were washed with 0.1 M PBS and incubated with Alexa Fluor 488-conjugated donkey anti-mouse or 594-anti-goat secondary antibodies (Invitrogen Life Technologies, Carlsbad, CA, USA) for 1 h at room temperature. The sections imaging were carried out using a microscope and captured (BX51-DSU, Olympus), three consecutive sections per animal were analyzed and similar sections were used.
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9

Quercetin-Induced Cellular Immunofluorescence

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Cells were grown on glass cover slips in 24-well culture plates at 2×104 cells per well for 24 hours. Then, the cells were treated with 50 µM of quercetin for 24 hours. Next, cells were washed with phosphate buffered saline (PBS), fixed for 15 minutes at room temperature with 4% paraformaldehyde, and permeabilised for 15 minutes with 0.3% Triton X-100 in PBS for 10 minutes. Then, the cells were blocked with 5% normal donkey serum in PBS for 1 hour. Subsequently, the cells were incubated at 4℃ with the desired primary antibody in 5% normal donkey serum overnight, followed by incubation with a specific fluorescence-conjugated secondary IgG (Invitrogen) for 1 hour in the dark. Finally, cells were washed with PBS and mounted using ProLong Gold antifade mountant with 4′,6-diamidino-2-phenylindole dichloride (DAPI) (Invitrogen) for nuclear staining. All images were taken using a fluorescence microscope (BX51-DSU, Olympus, Tokyo, Japan).
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10

Quantification of Quercetin-Induced Apoptosis

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Terminal deoxynucleotidyl transferase-mediated deoxyuridine triphosphate nick-end labelling (TUNEL) staining was performed to detect cells death using the In Situ Cell Death Detection Kit, TMR Red (Roche Molecular Biochemicals, Mannheim, Germany). Cells were grown on glass coverslips in 24-well culture plates at 2×104 cells per well for 24 hours. Next, the cells were treated with 50 µM of quercetin for 24 hours. Cells were washed with PBS, fixed with 4% paraformaldehyde for 15 minutes, and permeabilised for 2 minutes with 0.5% Triton X-100 in PBS on ice. Cells were then washed in PBS and incubated with TUNEL reaction mixture containing terminal deoxynucleotidyl transferase (TdT), and the reaction buffer containing fluorescein-dUTP (Roche Applied Sciences, Mannheim, Germany) for 60 minutes at 37℃. Finally, cells were washed with PBS and mounted using Pro-Long Gold antifade mountant with DAPI for nuclear staining. All images were taken using a fluorescence microscope (BX51-DSU, Olympus).
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