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75 protocols using facs lyse

1

Multicolor Flow Cytometry for Immune Cell Analysis

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Blood was collected with heart puncture and transferred into a Na EDTA-containing tube. Single cell suspensions were prepared from spleens and BM as described (Heo, 2005 ). Whole blood (50 ​μl) was stained and erythrocytes were lysed with FACSlyse (BD Biosciences, San Jose) before analysis. Splenocytes and BM cells were counted, and 1 ​× ​106 ​cells were used for staining followed by FACSlyse and analysis by six-color flow cytometry with a FACSCanto flow cytometer (BD Biosciences), and the following fluorochrome conjugated Abs: PerCP Cy5.5-CD45, APC Cy7-CD45, PerCP Cy5.5-CD4, PE-CD4, FITC-CD4, FITC-CD8a, PE-CD8a, PerCP-CD8a, FITC-CD3, APC-CD3e, PerCP-CD3e, PE Cy7-CD24, FITC-CD43, PerCP-CD249- APC Cy7-B220, PE -IgD, APC-IgM, APC Cy7-CD3, PE Cy7-CD19, PerCP cy5.5-CD93, APC-CD138, PE-CXCR4, FITC-MHC-II, PE-CD19, FITC-CD19, PE Cy7-CD19, APC-CXCR5, PE Cy7-PD1, PerCP Cy5.5-CD138 and anti-CD16/32 (Fc block). The Abs were purchased from BD Pharmingen (San Diego, CA), Biolegend (San Diego, CA), or eBiosciences (Thermo Fisher Scientific, MA, USA). Frequencies and numbers of populations in the blood and spleens of B6 and BTBR mice were gated based on FSC-A and SSC-A, followed by gating out the doublets and finally gated on CD45+ cell. Data were analyzed by Flow Jo-V10.
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2

Platelet and Monocyte Activation Assay

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Platelet surface P-selectin expression and platelet-monocyte aggregates were measured by flow cytometry. Blood (5 mL) was collected into 50 µL of 1 mmol/L D-phenylalanyl-L-propyl-L-arginine chloromethylketone (Enzo Life Sciences, Exeter, United Kingdom) and immediately aliquoted into Eppendorf tubes prefilled with or without agonist (PAR4-activating peptide, 200 µmol/L; ADP, 10 µmol/L; or arachidonic acid, 5 mmol/L) and the following conjugated monoclonal antibodies: Alexa Fluor647–conjugated CD14, PE (phycoerythrin)-conjugated CD62P, and fluorescein isothiocyanate–conjugated CD42a (Becton-Dickinson). All antibodies were diluted 1:10. Samples were incubated for 20 minutes at room temperature before fixing with 1% paraformaldehyde (P-selectin) or FACS-Lyse (Becton-Dickinson; platelet-monocyte aggregates). All samples were analyzed within 24 hours using an Attune NxT Flow Cytometer (Invitrogen). Data analysis was performed using FlowJo v10 (11 Treestar, OR).
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Platelet-Monocyte Aggregation Quantification

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Blood was taken from an antecubital vein using a 21-gauge cannula and anticoagulated with d-phenylalanyl-l-prolyl-l-arginine chloromethylketone (75 μm; Cambridge Biosciences) as previously described.22 (link) Samples were not analyzed unless venesection achieved rapid and uninterrupted blood flow. Five minutes after sample collection, samples were stained with the following conjugated monoclonal antibodies: allophycocyanin-conjugated CD14, allophycocyanin-conjugated CD36, phycoerythrin-conjugated CD62P, and phycoerythrin-conjugated CD154; phycoerythrin-conjugated CD40, fluorescein isothiocyanate–conjugated CD42a, and appropriate control isotypes (all Becton Dickinson). All antibodies were diluted 1:20. Once stained, samples were incubated for 20 minutes at room temperature to identify P-selectin and CD40L on the platelet surface and CD40 on the monocyte surface. Platelet-monocyte samples were fixed with FACS-Lyse (Becton Dickinson). Platelet samples were fixed with 1% paraformaldehyde. Samples were analyzed within 24 hours using a FACSCalibur flow cytometer (Becton Dickinson). Platelet-monocyte aggregates were defined as monocytes positive for CD14. Data analysis was performed using FlowJo (Treestar).
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Canine Immune Cell Profiling

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Flow cytometric immunophenotyping of leucocytes was performed by analyses of whole blood. The concentration and percentage of CD4 and CD8 T cell populations were measured using a mAb against canine CD4 FITC/CD8 RPE (DC048) purchased from AbD Serotec (Bio-Rad) (UK). Aliquots of 100 μl of whole blood containing approximately 1x106 white blood cells were added to 10 μl of mAbs and incubated for 1 hour in the dark at 4°C. Next, the erythrocytes were lysed, and the leucocytes were fixed by addition of FACSLyse (Becton Dickinson Biosciences, San Josè, CA, USA). After two washes with PBS, the cells were analysed by Cell Quest Pro software on a FACSCalibur flow cytometer (Becton Dickinson Biosciences) equipped with a 488 nm wavelength argon laser and a 635 nm wavelength red diode laser. The results were reported as the percentage of gated cells positive for each cell surface marker.
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5

Platelet Activation Markers in Blood Samples

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Platelet p-selectin expression and platelet-monocyte aggregates are sensitive markers of in vivo platelet activation.24–26 (link) Blood (2.7 mL) was collected immediately distal to the final perfusion chamber into tubes containing 0.3 mL of 3.8% sodium citrate and Pefabloc FG (final concentration 1.5 mg/mL; Quadratech Diagnostics, Surrey, UK). After 5 min, samples were aliquoted into Eppendorfs pre-filled with or without agonist [adenosine diphosphate (ADP) 20 μM, Sigma-Aldrich, Gillingham, UK; human alpha thrombin 0.1 U/mL, Enzyme Research Laboratories, Swansea, UK] and the following conjugated monoclonal antibodies: allophycocyanin (APC)-conjugated CD14, phycoerythrin (PE)-conjugated CD62P, and fluorescein isothiocyanate (FITC)-conjugated CD42a (Becton-Dickinson). All antibodies were diluted 1:10. Samples were incubated for 15 min at room temperature before fixing with 1% paraformaldehyde (p-selectin) or FACS-Lyse (Becton-Dickinson; platelet-monocyte aggregates). All samples were analysed within 24 h using a FACSCalibur flow cytometer (Becton-Dickinson). Data analysis was performed using FlowJo v10 (Treestar, Oregon, USA).
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6

Platelet and Monocyte Activation Analysis

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Samples were obtained at baseline, at 2 h immediately prior to the thrombosis study and at 24 h post exposure, and processed according to previously described protocols [59 (link)]. In brief, blood was taken from an ante-cubital vein using a 21-gauge cannula and anti-coagulated with D-phenylalanyl-Lprolyl-L-arginine chloromethylketone (75 μL; Cambridge Biosciences, UK). Samples were not analysed unless venesection achieved rapid and uninterrupted blood flow. Five minutes after sample collection, samples were stained with the following conjugated monoclonal antibodies: phycoerythrin (PE)-conjugated CD14 (Dako, Denmark), PE-conjugated CD62P, and PE-conjugated CD154 (Becton-Dickinson, UK); PE-conjugated CD40, fluorescein isothiocyanate (FITC)-conjugated CD42a, and FITC-conjugated CD14 (Serotec, USA); and appropriate control isotypes. All antibodies were diluted 1:20. Once stained, samples were incubated for 20 min at room temperature to identify P-selectin and CD40L on the platelet surface and CD40 on the monocyte surface. Platelet–monocyte samples were fixed with FACS-Lyse (Becton-Dickinson). Platelet samples were fixed with 1% paraformaldehyde. Samples were analysed within 24 h using a FACScan flow cytometer (Becton-Dickinson). Platelet–monocyte aggregates were defined as monocytes positive for CD14. Data analysis was performed using FlowJo (Treestar, USA).
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7

LCMV Infection and Intracellular Staining

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Subconfluent HaCaT cells were serum‐starved overnight and incubated overnight at 37°C with LCMV (MOI 0.05 and 0.2). Cells were detached from the 12‐well plate using 1% trypsin and fixed/permeabilized in 500 μl 2 × FACS Lyse (Becton Dickinson, Franklin Lakes, NJ) with 0.05% Tween‐20 for 10 min at room temperature. After washing, intracellular staining was performed for 30 min at room temperature using the LCMV nucleoprotein‐specific antibody VL‐4. After washing, they were resuspended in PBS/1% PFA. Flow cytometric analysis was performed using an LSRII flow cytometer (Becton Dickinson). Raw data were analyzed using FlowJo software (Tree Star Inc, Ashland, OR).
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8

Neutrophil Phenotyping by Flow Cytometry

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Seventy microlitres of blood were taken with heparinised glass capillaries from the tail. After blocking unspecific binding with 10% mouse serum and Fc receptor blocking antibodies (anti-mouse CD16/32, eBioscience, UK), the cell surface was stained with conjugated antibodies for CD11b (Pe-Cy7; eBioscience, UK), and Ly-6G (IA8 clone, APC-Cy7; BioLegend) for 45 min at 4°C. Red blood cells were lysed using FACS Lyse (BD Bioscience) for 10 min after which cells were washed and resuspended in 200 µl PBS. Cells were analysed on the FACS Canto flow cytometer (BD Bioscience) using FACS Diva software.
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9

Adoptive T-cell Immunotherapy in HM-T Mice

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Sublethally irradiated NOD/SCID-β2microglobulin-deficient mice were transplanted with human
CD34+ HPCs isolated from the PBMCs of granulocyte colony-stimulating factor mobilized donors. FLT3L or
IFNα were not used in HM-T. ~4 weeks following injection of CD34+ HPC, total T cells (autologous to
CD34+ HPCs) were isolated from PBMCs using human T-cell enrichment kits (StemCell Technologies). The day
preceding vaccination, mice were AT i.v. with 2×107 total T cells in PBS. The day after adoptive transfer, mice
were vaccinated i.v. with DC targeting vaccine. 75μl of blood was obtained via retro-orbital bleeding at indicated days.
CD8+ T cells were stained in blood with specific antibodies and FluM1-specific MHC Class I tetramers.
Following staining, blood was lysed with FACSlyse (BD) according to instructions and analyzed by FACS. Spleens and lungs were
digested as described above, except that lungs were digested for 40 minutes. A total of ten different donors were used to create
cohorts of HM-T for experiments.
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10

Multicolor Flow Cytometry for Acute Leukemia

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By NAVIOS 2 laser 6 colors flow cytometry (Beckman coulter, USA). The acute leukemia panel of fluorescein isothiocyanate (FITC)/phycoerythrin (PE) conjugated monoclonal antibodies (Beckman Coulter, life science, Hielach, USA); IgG1PE, CD45FITC, CD117PE, CD10FITC, CD19PE, HLA‐DR FITC, CD13PE, CD33PE, CD3FITC, CD7PE, C.TDTFITC, C.MPOFITC, CD14PE, CD15FITC, CD34PE, CD61 FITC, GLYCOPHORINPE, and CD56 PE (clone N901) were used for diagnosis and sub‐classification of AML. Schiff's reagent (Merck), erythrocyte lyses solution (FACS lyse BD‐Bioscience), perforating reagent tween 20, and phosphate buffer solution were used to prepare the solutions necessary to carry out the technique [9 ]. Gating was done on the residual normal BM lymphocyte population based on forward and side scatters and their bright expression of CD45. Those gated lymphocytes were analyzed for the percentages of CD3 + (PC5) and the expression of PD1 (VioBright FITC, clone 1.3.1.3) on these CD3+ lymphocytes (Figure 1).
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