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29 protocols using acsl4

1

Western Blot Analysis of Protein Expression

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Total proteins were obtained using protein isolation kits (BeyotimesP0013J) according to the manufacture’s instruction. The protein extracts were subjected to SDS-PAGE and then transferred to PVDF membranes. After blocking by BSA for about 1 h, proteins were incubated overnight at 4 °C with primary antibodies: TH (Abcam ab6211); DMT1 (Abcam ab55735); TfR1 (Abcam ab1086); FPN (Abcam ab78066); FTH1 (EPR18878) (Abcam ab183781); Caspase-3 (Abcam ab90437); GPX4 (Abcam ab125066); ACSL4 (Abcam ab155282). Next day, the blots were washed and incubated 1 h with horseradish peroxidase (HRP)-conjugated secondary antibodies: Goat Anti-Rabbit IgG H&L (Abcam ab6721) and Goat Anti-Mouse lgG H&L (Abcam ab6789). After washing the blots three times with TBST, the blots were visualized with an enhanced chemiluminescence detection system (Amersham Pharmacia Biotech). Samples were analyzed in triplicates and the measurements were averaged and used as one individual data point for statistical analysis. Quantification was done by densitometric analysis using Beta actin (Abcam ab210083) as an internal control.
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2

Western Blot Analysis of Ferroptosis Markers

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The sample was added to a 10% gel for electrophoresis. After electrophoresis, the protein was transferred to the membrane (Millipore, #IPVH00010) and then hybridized with the antibody. Finally, the signal on the membrane was detected by an ECL kit (Thermo, #34096). Antibodies: GPX4 (Abcam, #ab125066), SLC7A11 (Abcam, #ab175186), ACSL4 (Abcam, #ab155282), NRF2 (Proteintech, #16396-1-AP), FSP1 (Proteintech, #20886-1-AP), β-actin (CST, #4970s), PI3K (CST,#4249s), AKT (CST,#9272s), P-AKT (CST,#4060s), and mTOR (CST,#2983s).
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3

Western Blotting and qPCR Analysis

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Western blotting and quantitative PCR (RT‐qPCR) were performed following the previous report.
43 (link) Following antibodies were used in Western blotting: Actin, FSP1, ACSL4, SLC7A11, VDAC2, and GPX4 rabbit polyclonal antibodies (1:1000; Abcam); VCAM‐1 and ICAM‐1 (1:500; Santa Cruz Biotechnology, Inc, Dallas, TX, USA). The primers used in RT‐qPCR are shown in Table S1.
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4

Western Blot Analysis of Protein Expression

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As described previously,29 (link) cells were lysed by a lysis buffer. SDS-PAGE (12%, w/v) was used to separate the proteins, which were then transferred onto PVDF membranes (provided by Thermo Fisher, Waltham, MA, USA). Primary antibodies (monoclonal) against GPX4 (cat. no. ab125066, dilution 1:1000, Abcam, Cambridge, UK), p53 (cat. no. ab131442, dilution 1:1000, Abcam), FTH1 (cat. no. ab240277, dilution 1:1000, Abcam), ACSL4 (cat. no. ab227256, dilution 1:1000, Abcam UK) and β- actin (cat. no. ab179467, dilution 1:2000, Abcam), along with peroxidase- conjugated rabbit anti-IgG secondary antibodies (cat. no. A2074, dilution 1:4000, Sigma-Aldrich), were used in the Western blot analysis. The immunoreactive signals were visualized using enhanced chemiluminescence detection. To quantify protein levels, X-ray films were scanned and analyzed using Image J 1.47i software (National Institutes of Health, Bethesda, MD, USA).
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5

Protein analysis of rat ileums

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Total protein was extracted from rat ileums, and the concentration of total protein was determined by BCA Protein Assay kit (TransGen, Beijing, China). Western blotting was performed with the following primary antibodies: ACSL4 (Abcam), GPX4 (Abcam), FTH1 (Abcam), ZO-1 (Abcam), occludin (Zymed Laboratories), claudin-1 (Santa Cruz Biotechnology), and claudin-2 (Zymed Laboratories). β-Actin (Sigma) was used as loading control. For protein quantification, the density of Western blot bands was measured by Image-Pro Plus 6.0 software (Media Cybernetics, Rockville, MD, USA).
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6

Western Blot Analysis of Cell Signaling

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Tissue lysates were homogenized in SDS lysis buffer [Cell Signaling Technology (CST), #7722] and transferred onto polyvinylidene difluoride membranes. After blocking in 5% milk in tris-buffered saline and 0.1% Tween 20, membranes were incubated overnight with the following antibodies at 4°C: CASP9 (Abcam, #ab202068), cleaved CASP3 (CST, #9664), RIP3 (Millipore Sigma, #PRS2283), BAX (CST, #2772), BCL2 (CST, #3498), GSDMD (Santa Cruz Biotechnology, sc-393656), NLRP3 (CST, #15101), ACSL4 (Abcam, #ab155282), LC-3 (CST, #2775S), cGAS (CST, #31659), STING (CST, #13647S), TBK1 (CST, #38066), pTBK1 (CST, #5483), IRF3 (CST, #4302), pIRF3 (CST, #4947), p65 (CST, #8242), pp65 (CST, #3033), and GAPDH (CST, #5174). Membranes were incubated with horseradish peroxidase–conjugated secondary anti-rabbit or anti-mouse antibody (CST, #7074 and #7076) for 1 hour at room temperature. Signal was detected by enhanced chemiluminescence (SuperSignal West Femto Maximum Sensitivity Substrate, #34094; Thermo Fisher Scientific). Western blots were quantified using the Fiji software (58 (link)).
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7

Western Blot Analysis of Protein Expression

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Frozen heart tissues were lysed mechanically in cold RIPA buffer. Proteins were extracted and quantified using a BCA protein assay kit (Best Bio, Shanghai, China). The proteins were electrophoretically separated using SDS-PAGE and transferred to a polyvinylidene difluoride membranes (Millipore, United States). The membranes were blocked with 3% BSA for 1.5 h at room temperature, and antigens were detected using the following antibodies at 4°C overnight, CSE (1:1,000, Proteintech, United States), CBS (1:1,000, Proteintech, United States), 3-MST (1:5,000,SantaCruz, United States), P53 (1:2000, Proteintech, United States), P21 (1:2000, Proteintech, United States), NRF2 (1:2000, Proteintech, United States), SLC7A11 (1:2000, Proteintech, United States), ACSL4 (1:2000, Abcam, United States), GPX4 (1:2000, Proteintech, United States), FPN1 (1:1,000, Proteintech, United States), FTH (1:1,000, Immunoway, United States), TRF1 (1:1,000, Abcam, United States), and GAPDH (1:5,000, Proteintech, United States). The blots were incubated with a horseradish peroxidase-conjugated anti-rabbit (Proteintech, United States) or anti-mouse (Proteintech, United States) secondary antibody at room temperature for 1.5 h. All antibodies were diluted with TBST. Blot bands were visualized by enhanced chemiluminescence and detected by ImageJ software (1.52, NIH, United States).
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8

Western Blot Analysis of Protein Markers

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Total protein from pancreatic tissue was obtained by RIPA lysis buffer with 1% phenylmethylsulfonylfluoride (Solarbio). The proteins were electrophoresed on 10% and 12% SDS-PAGE gels and transferred onto polyvinylidene fluoride membranes (Millipore, Darmstadt, Germany). After being blocked in 5% skimmed milk for 2 h at 25 °C, the membranes were cut prior to hybridisation with primary antibodies. After that, the membranes were incubated at 4 °C overnight with primary antibodies: GPX4 (1:1000; BOSTER), xCT (1:1000; Abcam), ACSL4 (1:1000; Abcam), LPCAT3 (1:500; ABclonal, Wuhan, China), binding immunoglobulin protein (Bip, 1:1000; Zenbio, Chengdu, China), C-EBP homologous protein (CHOP, 1:1000; BOSTER, Wuhan, China), eukaryotic initiation factor 2α (EIF2α, 1:2000; Proteintech, Wuhan, China), phosphoration of EIF2α (p-EIF2α, 1:1000; Abcam), and β-actin (1:1000; Cell Signaling Technology, Danvers, MA, USA). Subsequently, the membranes were incubated with a secondary goat anti-rabbit antibody (1:10,000; Cell Signaling Technology) for 2 h at 25 °C. Protein bands were visualized using the Odyssey Fc Imaging System, and band images were analyzed using Image J software. All initial western blotting bands in this study are presented in the Supplementary Information.
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9

Protein Expression Analysis Protocol

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The proteins were isolated and separated by SDS‐PAGE. Primary antibodies against CYGB (#60228, Proteintech), YAP1 (#14074, Cell Signaling Technology), phospho‐YAP1 (Ser127) (#13008, Cell Signaling Technology), p53 (#2524, Cell Signaling Technology), phospho‐p53 (Ser15) (#9284, Cell Signaling Technology), SLC7A11 (#12691, Cell Signaling Technology), ACSL4 (#ab155282, Abcam) and GAPDH (#AP0063, Bioworld Antibodies) were used.
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10

Protein Expression Analysis in Stroke

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Protein sample tissues were collected from the peri-infarct cortex. Proteins were separated on SDS/PAGE gels (10%) and electroblotted into a PVDF membrane. The PVDF membranes were then incubated in 5% nonfat milk at room temperature for 1 h and then incubated with primary antibodies overnight at 4°C. The membrane was washed three times with phosphate-buffered saline (PBS) containing 0.1% Tween-20 and incubated in the secondary antibodies (ABclonal, China) for 1 h at room temperature. We used the Bio-Rad system to scan the proteins (n = 3/group). The primary antibodies used in this experiment were listed as follows: GAPDH (Proteintech, China), GPX4 (Abmart, China), HIF-1α (Zen-Bio, China), and ACSL4 (Abcam, UK).
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