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Fluoroshield with 4 6 diamidino 2 phenylindole dapi

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Fluoroshield with 4′,6-diamidino-2-phenylindole (DAPI) is a laboratory reagent used for fluorescent staining of DNA. DAPI is a blue-fluorescent dye that binds strongly to adenine-thymine (A-T) rich regions in DNA. It can be used to visualize nuclei and chromosomes in fixed cells and tissues.

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21 protocols using fluoroshield with 4 6 diamidino 2 phenylindole dapi

1

Visualizing Aspergillus fumigatus Interaction with Alveolar Cells

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Human alveolar epithelial cells (A549) were seeded onto collagen-coated coverslips and incubated at 37°C and 5% CO2 for 24 h. Cells were incubated in the presence of test agents for 2 h, after which the medium was replaced and the coverslips were incubated at 37°C and 5% CO2 for 24 h. CellTracker red CMTPX dye (Thermo Fisher) was added to the cell medium for 30 min, the wells were washed with PBS, and green fluorescent protein (GFP)-expressing A. fumigatus conidia (a kind gift from William Hope, University of Liverpool) were added to wells to a final concentration of 1 × 103 spores ml−1. After 24 h of incubation at 35°C and 5% CO2, coverslips were washed and affixed to slides by use of Fluoroshield with DAPI (4′,6-diamidino-2-phenylindole) (Sigma).
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2

Trypomastigote Invasion and Replication Assay

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Nude mouse trypomastigotes derived from all strains were purified, counted, and incubated with HFF-1 and Swan 71 semiconfluent cell monolayers for 2 h at a multiplicity of infection of 5 parasites to 1 host cell. Afterwards, noninternalized trypomastigotes were washed 5 times with PBS and cells were incubated for another 48 h before immunofluorescence microscopy. After 48 h, coverslips were washed with PBS, fixed with 95% (vol/vol) ethanol, and stained with Fluoroshield with DAPI (4′,6-diamidino-2-phenylindole; Sigma, USA). Infectivity was evaluated considering invasion and replication capacity by counting infected cells and parasites per infected cell in the infection photos obtained from each experimental condition. For each replicate, a total of at least 500 cells were counted and the results are expressed in graphs as the mean values and standard errors (SE) of 3 independent experiments. The infection index was calculated as follows: infection index = (number of amastigotes × number of infected cells)/total number of cells.
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3

Immunodetection of Brucella in Spleen

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Formalin-fixed and paraffin-embedded tissue sections of spleen were mounted on poly-l-Lysine pre-coated slides (Sigma, USA) followed by deparaffinization in xylene, rehydration in graded ethanol, and quenching of endoperoxidase activity using 3 % H2O2 in methanol. Antigen retrieval was done in heat-mediated antigen retrieval solution according to the manufacturer’s instructions (Vector labs, USA). Then, 2.5 % normal non-immune goat serum (Vector labs) was used to block non-specific sites for 1 h at room temperature. For, both IHC and IFT, sections were incubated with rabbit anti-brucella hyper-immune serum (1 : 20) (supplied from the Division of Biological products, ICAR-IVRI) as primary antibodies. For IHC, sections were incubated with goat anti-rabbit IgG (whole molecule)-peroxidase conjugate (1 : 200) (Sigma, USA) and developed using a DAB (3,3′-diaminobenzidine tetrahydrochloride) enhanced liquid-substrate system (Sigma, USA). Immunostained sections were counter stained with Mayer’s hematoxylin (Sigma, USA) and mounted with tissue mounting medium (CC/ Mount, Sigma, USA). For IFT, goat anti-rabbit IgG (whole molecule) – FITC conjugated secondary antibodies (Sigma, USA) was used (1 : 40) followed by mounting using Fluoroshield with DAPI (4′,6-diamidino-2-phenylindole) (Sigma, USA) and viewed under fluorescent microscope (Nikon Eclipse Ti-S, Japan).
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4

Immunofluorescence Staining of Intestinal Cells

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Caco-2 monolayers or HT-29 cells were pretreated with bacteria. Cells were fixed in 4% PFA for 10 min at room temperature and then blocked in 5% normal goat serum–PBS for 1 h at room temperature. Subsequently, Caco-2 monolayers were probed with rabbit anti-ZO-1 antibody (1:200) and HT-29 cells were probed with rabbit anti-MUC2 antibody (1:100) for 12 h at 4°C. The cells were then incubated with Alexa Fluor 568-coupled goat anti-rabbit secondary antibody (Invitrogen, Carlsbad, CA, USA) at room temperature in the dark for 1 h. The membranes were mounted with Fluoroshield with DAPI (4′,6-diamidino-2-phenylindole) (Sigma-Aldrich, St. Louis, MO, USA) and examined under a fluorescence microscope (Nikon Eclipse TE2000-U).
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5

Immunofluorescence Assay for MCL-1 in Rap-treated Cells

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Hl-1 cells were grown on cover slips pre-coated with 12.5 µg/ml bovine fibronectin in 0.02% gelatin solution. Transfection was performed using siPORT Amine (Applied Biosystems) according to manufacturer's protocol. 20 nM of miR-29 inhibitor cocktail (mirVana miRNA inhibitors for miR-29a, b and c) or 20 nM Allstars negative siRNA (Qiagen) was used for transfection. After 8 hours, cells were subjected to Rap treatment (10 nM) overnight. Coverslips were washed with PBS, fixed with 4% paraformaldehyde for 20 min at room temperature, permeabilized with 1% Triton-X, washed with PBS-T (1 mL Tween-20/L), and blocked with background sniper (Biocare Medical). Anti-MCL-1 antibody (Cell Signaling Technology) (1∶50 dilution) was added in fluorescent AB diluent (Biocare Medical) and incubated overnight at 4°C. After repeated washing with PBS-T, coverslips were incubated with Alexa Fluor 488 goat anti-rabbit (Invitrogen Inc.) (1∶200 dilution) for 1 hr at room temperature. After washing with PBS-T, coverslips were mounted on slides with Fluoroshield with 4′,6-diamidino-2-phenylindole (DAPI) (Sigma-Aldrich) and visualized using an Olympus IX51 microscope with a UC50 digital camera using cellSense software (Olympus, Center Valley, PA) at equal exposure times. Imaging was done at 60× magnification using oil immersion.
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6

Time-Dependent NP Uptake in SK-N-SH Cells

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For the in vitro NP-uptake study, both differentiated and undifferentiated SK-N-SH cells were grown in Falcon™ eight-well culture slides (BD Biosciences, San Jose, CA, USA) at a density of 2×104 cells/well and incubated with rhodamine-labeled NPs at time points of 30 minutes and 1, 2, and 4 hours. After the specified time, the media were removed and cells washed thrice with 1× PBS to remove the free NPs that were neither taken up nor adhered to the cells.
Cells were immediately fixed with 4% paraformaldehyde for 15 minutes, followed by washing and mounted with a coverslip using a Fluoroshield™ with 4′,6-diamidino-2-phenylindole (DAPI; Sigma-Aldrich). Cellular uptake was determined using an SP5 confocal microscope (Leica Microsystems, Wetzlar, Germany), and all the images were taken at 40× magnification. The percentage internalization of NPs are expressed as means ± standard deviation obtained by counting cells in five or more different fields.
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7

Immunofluorescence Microscopy of MPN3 Cells

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Immunofluorescence microscopy was performed as described previously (Lee et al. 2005 (link)). Briefly, the attached MPN3 cells were fixed and incubated at room temperature (RT). The cells were then incubated with anti-fgl2 antibody and then with FITC-conjugated mouse IgG antibody (Santa Cruz biotechnology, TX, USA). These cells were mounted on glass slides using Fluoroshield™ with 4′,6-diamidino-2-phenylindole (DAPI) (Sigma Aldrich). Images were obtained using a LSM5 PASCAL fluorescence microscope (Zeiss, Germany).
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8

Quantifying β-MHC Expression in HL-1 Cells

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Immunofluorescence was used to determine the changes in the expression of β-MHC in HL-1 cells in response to different treatments. Briefly, HL-1 cells were grown on cover slips as described previously (18 (link)). All treatments were performed in triplicates. After treatments with Ang II (100nM:12hr) or Neb (1µM: 12hr) coverslips were washed with HEPES (Sigma), fixed with 4% paraformaldehyde for 15 min at room temperature, permeabilized with 0.5% Triton-X-100, washed with HEPES-T (1mL Tween-20/L), and blocked with 1% bovine serum albumin (BSA) (Jackson ImmunoResearch), 10% goat serum (Sigma) and 0.1% Tween 20 (Fisher Scientific). Cells were incubated with anti- β-MHC antibody (Sigma) (1:100 dilution) overnight at 4°C and repeatedly washed with HEPES. The coverslips were then incubated with Alexa Fluor 488 goat anti-rabbit (Invitrogen Inc.) (1:200 dilution) for 1 hr at room temperature. Coverslips were washed with HEPES and mounted with Fluoroshield with 4′,6-diamidino-2-phenylindole (DAPI) (Sigma-Aldrich) and visualized using a Leica DMI 4000B inverted confocal microscope using Leica Application Suite software. Imaging was done at 60x magnification using oil immersion.
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9

Immunofluorescence analysis of embryoid bodies

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Embryoid bodies were fixed in 4% paraformaldehyde (vol/vol) in PBS. Fixed EBs were cryoprotected in 30% sucrose and were embedded in OCT (Tissue-Tek) and sectioned for staining. Primary antibody stainings were done by overnight incubation at 4°C, and secondary antibody stainings were incubated for 1 h at room temperature. Day 9 neuronal stainings were done on coverslips coated with poly-D-lysine with the primary and secondary antibody incubation times as described above. Samples were mounted with Fluoroshield with 4,6-diamidino-2phenylindole (DAPI; Sigma) and images were acquired using a SP5 Leica confocal microscope. The following primary and secondary antibodies were used: V5 (Ms): ThermoFisher #R960-25; Tuj1 (MS): Covance #mms-435p; Tuj1 (Rb): Sigma #T2200;5-HT (Rb): Sigma #S5545; 5-HT (Gt): Abcam # Ab66047; TH (Rb): Peel-Freez #P40101-0; TH (Ms): Chemicon #MAB318; TPH1/2 (Sheep): Millipore #AB1541. Alexa 555 anti-mouse: Invitrogen # A31570; Alexa 488 anti-mouse: Invitrogen # A21202; Alexa 633 anti-mouse: Invitrogen # A21052; Alexa 555 anti-rabbit: Invitrogen # A31572; Alexa 555 anti-goat: Invitrogen # A21432; Alexa 488 anti-rabbit: Invitrogen # A21206; Alexa 488 anti-sheep: Invitrogen # A11015.
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10

Cardiac Fibrosis and Apoptosis Analysis

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Cardiac specimens were fixed in 4% formaldehyde and embedded in paraffin. After deparaffinization and rehydration, 5-μm-thick sections were prepared and mounted on glass slides.
Picro-Sirius Red Staining—Cardiac sections were stained with 1% Sirius Red in picric acid (Sigma-Aldrich, St. Louis, Missouri) to detect interstitial fibrosis and to calculate infarct size (Cannavo et al., 2017 (link)). The percentage of fibrosis and the infarct size were quantified using a software (ImageJ). Cardiac fibrosis images were acquired using a BA410 microscope (Motic®). For each of the samples, five to six fields (∼400–900 cells for field) were acquired to detect fibrotic areas.
TUNEL staining—Terminal deoxynucleotidyl transferase-mediated dUTP nick-end labeling (TUNEL) was performed on fixed paraffin-embedded LV sections using a commercial kit (Roche), and the assay was performed according to manufacturer’s instructions. Finally, cardiac sections were mounted with Fluoroshield with 4′,6-diamidino-2-phenylindole (DAPI) (Sigma-Aldrich, St. Louis, Missouri). Fluorescent images were acquired using a ZOE Fluorescent Cell Imager (Bio-Rad). For each of the samples, five to six fields (∼400–900 cells for field) were acquired.
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