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5 protocols using erk1 k23

1

Immunoblotting Analysis of Protein Signaling

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Protein extracts were prepared as previously described [21] (link). 35 μg total proteins were denatured, separated on 10% SDS–PAGE, and transferred to nitrocellulose (Protran BA85, GE Healthcare Life Sciences). Membranes were incubated with primary antibodies diluted in NET-gelatin against pEGFR Y1173 (Cell Signaling Technologies, #4407), EGFR (Transduction Laboratories, E12020), pERK1/2 (Cell Signaling Technologies, #9101), ERK1 K23 (Santa Cruz, sc-94), pAKT (Cell Signaling Technologies, #9271), AKT1/2/3 H-136 (Santa Cruz, sc-8312), PARP (Cell Signaling Technologies, #9542), Caspase 3 (Cell Signaling Technologies, #9662), Tubulin (Sigma, T9026). Secondary HRP-conjugated anti-rabbit (Bio-Rad) and anti-mouse (Sigma) antibodies were used and detection was carried out using an ECL reagent (PerkinElmer, Rodgau, Germany) on X-ray films.
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2

HEK 293 Cell Transfection and Erk Activation

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HEK 293 cells were cultivated to 70–80% confluency before transfection. For transfection of Fgf8 and Hsc70 cells were seeded at 2×106 cells in a 10cm plate. After 24 hours cells were transfected according to the manufacturer’s protocol using Promofectin (Promocell). Briefly two mixtures containing DNA/serum free DMEM and Promofectin/serum-free DMEM were combined incubated for 20 min at RT and added to the cells. 24 hrs after transfection the culture medium was replaced and Bafilomycin A1 was added. 24 hrs later the cells were lysed in sodium dodecyl sulfate (SDS)–sample buffer containing 100 mM dithiothreitol (DTT) and subjected to Western blot analysis. Activated Erk was monitored using an antibody against phosphorylated Erk (phospho-p44/42, Cell Signaling). For the loading control the membrane was stripped (62.5 mM Tris, pH 6.8, 2% SDS, 0.8% DTT) and reprobed with an Erk antibody (Erk 1 (K-23) Santa Cruz). Blots were stained using the enhanced chemiluminescence system (Thermo Fisher Scientific). The quantification of proteins bands in Western blot analysis was performed using the program ImageJ.
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3

Chromatin Immunoprecipitation and Antibody Validation

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Antibodies used were anti: PHF8 (Abcam ab36068), HA (Abcam 20084), FLAG M2 (Sigma F3165), MYC (Abcam ab9132), β-tubulin (Millipore MAB3408), H4K20me1 (Abcam ab9051), H4K20me3 (Abcam ab9053), H3K4me3 (Abcam ab8580), H3K9me2 (Abcam ab1220), HDAC1 (Abcam ab7028), SIN3A (K-20) (Santa Cruz Biotechnology), ERK2 (D-2) (Santa Cruz Biotechnology sc-1647) and ERK1 (K23) (Santa Cruz Biotechnology sc-94). Human recombinant IFNγ was used at 5 ηg/ml and purchased from Peprotech.
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4

Western Blot Analysis of Cell Signaling

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Protein samples were electrophoresed using 7.5 or 10% SDS–PAGE and performed as previously described [45 (link)]. Membranes were incubated with the primary antibodies against pEGFR Y1173 (Cell Signaling, #4407), EGFR (Transduction Laboratories, E12020), pHER2 Y1248 (Cell signaling, #2247), HER2 (Millipore, #06-562), pHER3 Y1289 (Cell signaling, #4791), HER3 (Millipore, #05-390), pERK1/2 (Cell Signaling, #9101), ERK1 K23 (Santa Cruz, sc-94), pAKT (Cell Signaling, #9271), AKT1/2/3 H-136 (Santa Cruz, sc-8312), PARP (Cell Signaling, #9542), Tubulin (Sigma, T9026), Secondary HRP-conjugated anti-rabbit (Bio-Rad) and anti-mouse (Sigma) antibodies were used and detection was done using an ECL reagent.
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5

Antibody Characterization for CD44v6 Targeting

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The antibodies used in the present study were directed against rat CD44v6 (1.1ASML, described in [20 (link)]) and human CD44v6 (VFF18; Boehringer Ingelheim), Erk-1 (K-23; Santa Cruz), phospho-p44/42 MAPK (Thr202/Tyr204; Cell Signaling Technology), penta-His (Qiagen), human HGF (AF-294-NA; R&D Systems), rat Met (B2; Santa Cruz), human Met (25H2; Cell Signaling Technology) phospho-Met (Tyr1234/1235; Cell Signaling Technology), human TGF-α (transforming growth factor alpha; Peprotech), VEGFR-2 (A3; Santa Cruz) and human VEGF-A165 (VEGF165) (AF-293-NA; R&D Systems). The secondary antibodies labelled with horseradish peroxidase (HRP) were from Dako, the phycoerythrin (PE)-labelled antibody from Thermo Scientific and the FITC–streptavidin from Invitrogen. The human HGF was a generous gift from Ermanno Gherardi (University of Pavia, Pavia, Italy). Human VEGF165 and human TGF-α were from Peprotech. The peptides have already been described in [14 (link)] and their sequences are: rat CD44v6 5mer–NEWQG, rat CD44v6 14mer–KEKWFENEWQGKNP, human CD44v6 5mer–NRWHE, human CD44v6 14mer–KEQWFGNRWHEGYR, mouse CD44v6 5mer–NGWQG and mouse CD44v6 14mer–QETWFQNGWQGKNP.
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