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Ibright fl1500

Manufactured by Thermo Fisher Scientific
Sourced in United States

The iBright FL1500 is a fluorescence imaging system designed for gel and blot analysis. It captures high-quality fluorescent images of various sample types, including gels, membranes, and plates. The core function of the iBright FL1500 is to provide researchers with a reliable and efficient tool for visualizing and analyzing fluorescent-labeled biological samples.

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22 protocols using ibright fl1500

1

Western Blot Analysis of Complement C3

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Plasma was diluted 1/100 in H2O. Two volumes of this sample were mixed with one volume of NuPAGE® LDS sample buffer (4X) (Thermofisher) containing reducing agent (DTT 0.33 M) and then denatured at 90°C for 10 min. Proteins were separated in NuPAGE 10% Bis-Tris gel (Thermofisher). The proteins were transferred onto a nitrocellulose membrane using iBlot (Invitrogen). The membranes were incubated overnight with primary antibody (Goat IgG fraction anti-mouse complement C3, MP BIOMEDICALS, #55463), followed by a secondary antibody (rabbit anti-goat HRP, Thermofisher, #31402). Revelation was done by chemiluminescence using a substrate for HRP (SuperSignal® WestDuraLuminol Thermofisher, #1856145), detected by iBright Western Blot Imaging System (iBright FL1500 Thermofisher).
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2

Western Blot Analysis of Cardiac Proteins

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LV tissue samples were ground in liquid nitrogen and sonicated in PBS with 1X phosphatase and protease inhibitors. The protein content in the sample was quantified using the BCA protein assay kit (ThermoFisher Scientific, 23225). Then, 40µg protein was loaded on each well and separated using SDS-PAGE and transferred into methanol-activated PVDF membrane. The membrane was then blocked with 5% non-fat milk in TBST for 1 hour. Then, the membrane was incubated with primary antibodies for cardiac β-myosin heavy chain (Abcam, ab50967 at 1:1000 dilution), atrial natriuretic peptide (Thermo Fisher Scientific, PA5-29559 at 1:1000 dilution), and GAPDH (Cell Signaling Technologies Inc., CST 97166 at 1:1000 dilution) overnight at 4°C. Next day, the membrane was washed with TBST three times, 10 minutes each. The membrane was then incubated with HRP-conjugated secondary antibodies (Abcam ab97064, ab97030 at 1:4000 dilution in 5% non-fat milk in TBST) for 1 hour at room temperature. Then, the membrane was washed with TBST three times, 10 minutes each to remove unbound secondary antibodies. The protein band was detected using an iBright FL1500 instrument (Thermo Fisher Scientific) and the bands were quantified using ImageJ analysis software from the National Institutes of Health.
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3

Modulation of Senescence Markers by D-panthenol

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hDPCs (1 × 106 cells/dish) were seeded in 100 mm culture dishes and cultured for 24 h. D-panthenol was treated at appropriate concentrations for 24 h. Cells were then washed with ice-cold PBS and lysed on ice in an M-PER buffer (Thermo Fisher Scientific, Waltham, MA, USA) supplemented with a Complete™ protease inhibitor cocktail and phosphatase inhibitor (Roche, Indianapolis, IN, USA). 40 μg of protein was analyzed by Western blotting with appropriate antibodies to evaluate protein expression; β-catenin (1000:1 dilution, Santa Cruz, CA, USA), CDKN2A/p16INK4a (1000:1 dilution, Abcam, Cambridge, UK), p21 (1000:1 dilution, cell signaling technology, Danvers, MA, USA), caspase3 (1000:1 dilution, cell signaling technology, Danvers, MA, USA), GAPDH (2000:1 dilution, Santa Cruz, CA, USA). Western blot was analyzed by a chemiluminescence detector (iBright FL1500, Thermo Fisher Scientific, Waltham, MA, USA).
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4

Western Blot Analysis of Cellular and Kidney Proteins

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Western blot analysis was performed as previously described (Flores et al., 2011 ). Cellular (40 μg) and kidney (20 μg) protein lysates were isolated as described above, resolved electrophoretically, and transferred to Immobilon filters (Millipore, Billerica, MA, United States). Filters were cut horizontally along specific molecular weight bands, blocked in 5–8% non-fat dried milk and 0.05% Tween and immunoblotted with a primary antibody. After being washed, blots were incubated with a horseradish peroxidase-conjugated secondary antibody (Sigma, St. Louis, MO, United States) and bands were visualized by the West Pico enhanced chemiluminescence kit (Pierce, Rockford, IL, United States). Imaging was performed on an iBright FL1500 (Thermo Fisher Scientific, Waltham, MA, United States).
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5

Western Blot Profiling of IDO1 Protein

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Total protein was extracted using RIPA lysate buffer and quantified using BCA kit (Beyotime Biotechnology). Proteins were separated by 12% SDS-PAGE and transferred onto PVDF membranes (Millipore, USA). Membranes were blocked with 5% skim milk at room temperature for 1 h, then incubated with rabbit anti-IDO1 (1:1,000, Proteintech) and rabbit anti-GAPDH (1:10,000, Proteintech) overnight at 4°C. Membranes were further incubated with secondary antibodies (1:10,000, proteintech) for 1 h. Detection was performed using iBright FL1500 (Thermo fisher, USA).
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6

Enzymatic Deamination Activity Assay

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Activity assays for purified A3B-CTD or A3A were performed with 6-FAM labeled gel purified oligonucleotide as substrates in a reaction buffer [20 mM Tris-Cl (pH 8), 1 mM DTT, 1 mM EDTA] at 37 °C for the indicated length of time. The oligonucleotide sequences are provided in Supplementary Table S3. The reactions were terminated by heating samples for 10 mins at 95 °C. Oligos were treated with E. coli Ung for 30 mins at 37 °C. Reactions were terminated by adding NaOH to 0.1 M and heating the solutions for 10 mins at 95 °C. The reaction products were separated on denaturing polyacrylamide gel (15% w/v) and the DNA products were visualized and photographed using iBright FL 1500 (Thermo Fisher Scientific). The band intensities in the gels were determined using ImageJ software (NIH).
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7

Western Blot Analysis of Inflammatory Proteins

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Five to ten micrograms of protein from the cell lysates was run on 4 to 12% NuPAGE Bis-Tris SDS-PAGE gels (Invitrogen by ThermoFisher Scientific) and transferred to polyvinylidene difluoride membranes (ThermoFisher Scientific) using an iBlot 2 gel transfer device (Life Technologies). Membranes were blocked in 5% nonfat dairy milk and incubated with primary antibodies overnight. The primary antibodies used are rabbit-anti-mouse monoclonal total pyrin antibody (ab195975; abcam), rabbit-anti-mouse monoclonal antibody phospho-serine 205 (ab201784; abcam), rabbit-anti-mouse/human IL-1β (number 12242; Cell Signaling), and rabbit-anti-mouse/human polyclonal β-actin (number 4967; Cell Signaling). Horseradish peroxidase-conjugated anti-rabbit antibody (Jackson Laboratory) was used as a secondary antibody. Proteins were visualized using chemiluminescent detection reagent (GE Healthcare) on an iBright FL1500 (ThermoFisher Scientific).
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8

Western Blot Quantification Protocol

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Equal amounts of proteins (10 μg) were resolved by SDS PAGE gels and transferred to polyvinylidene difluoride (PVDF) membrane. After blocking for at least 1 h at room temperature, membranes were incubated overnight at 4 °C with primary antibodies anti-β-ACTIN, anti-GAPDH, anti-α-TUBULIN, anti-CDK6, TOMM20 and then incubated with horseradish peroxidase-labeled secondary antibodies, either anti-rabbit or mouse, for 60 min. All membranes were visualized using ECL Select and exposed to iBright FL1500 (ThermoFisher) (Bisio et al., 2017 (link)). Signal was quantified by Fiji-ImageJ software.
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9

Protein Extraction and Immunoblotting Protocol

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Cells were lysed on ice for 30 min, using cold RIPA buffer supplemented with protease inhibitor tablets (Pierce). After centrifuged at 10,000 × g for 30 min at 4 °C, cleared lysates were stored at −80 °C until used for immunoblotting. Samples were run on a 4–12% SDS-PAGE gel prior to transfer to nitrocellulose membranes. Anti-V5 (Invitrogen, Cat# R960-25), anti-Flag (Sigma, Cat#: SAB4200071), anti-acetyl-Lys (Cell Signaling Technology, Cat#: 9441), anti-myc (Covance, Cat# 904401), anti-HA or anti-HA-HRP (Roche, cat#: 11867423001, 12013819001), anti-SIRT1 (Santa Cruz Biotechnology, Cat#: sc-74504), and anti-SIRT2 (Cell Signaling Technology, Cat#: 12650) were used to detect the proteins of interest while anti-actin (Sigma, Cat#: SAB4301137), anti-GAPDH (Millipore, Cat#: AB2302), and anti-tubulin (Abcam, Cat#: AB14128) were used as loading controls. The blots were probed with the indicated primary antibodies followed either by Alexa Fluor-conjugated secondary antibodies for near-infrared fluorescence detection or by HRP-conjugated secondary antibodies for chemiluminescence detection. Unsaturated signals were collected using Hyperfilm ECL (GE healthcare), Odyssey Fc (Li-Cor) or iBright FL1500 (ThermoFisher) imaging system. Full scan of cropped immunoblots were provided in Supplementary Fig. 1.
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10

Protein Expression Analysis in Cells

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Protein concentration of cells and ABs was determined by BCA protein assay. The same amount of total protein was separated in 4%–10% SDS-PAGE and transferred to the PVDF membrane. The proteins transferred to the membrane were blocked at room temperature with 5% skim milk for 60 min, followed by overnight incubation with primary antibodies at 4 °C. Then, after washing with TBS-T, the membrane was incubated for 2 h at room temperature with secondary horseradish peroxidase-conjugated goat anti-rabbit IgG. The protein bands were visualised with enhanced chemiluminescence (Thermo Fisher Scientific, iBright FL1500, USA). The antibodies used in this procedure are as follows: β- Tubulin (CST, #2146, 1:1000), β-actin (CST, #8457, 1:1000), CD86 (CST, #91882, 1:1000), iNOS (CST, #13120, 1:1000), CD206 (CST, #24595,1:1000), Arginase-1 (CST, #93668, 1:1000), Caspase-3 (CST, #9662,1:1000), Cleaved Caspase-3 (CST, #9664,1:1000).
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