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4 protocols using 4 6 diamidino 2 phenylindole dihydrochloride dapi

1

Immunofluorescence Analysis of CRBN Expression

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H929 and RPMI8226 cells were allowed to attach to a glass slide coated with 10 μg/mL of fibronectin (catalog 341635; Sigma-Aldrich, St. Louis, MO) for 1 h at 37 °C. The cells were subsequently fixed with 4% formaldehyde in PBS for 15 min at room temperature. After fixation, the slides were blocked with 10% fetal bovine serum in cell culture medium and subsequently incubated overnight at 4 °C with the CRBN antibody (PA598707; Thermo Fisher Scientific). The slides were subsequently washed thrice with PBS and stained with Alexa Fluor 594 goat anti-rabbit antibody (R37117; Thermo Fisher Scientific) for 1 h. After washing thrice with PBS, the slides were stained with 4′,6-diamidino-2-phenylindole dihydrochloride (DAPI; 4083; Cell Signaling) for 5 min and mounted with the antifade mounting medium (Vector, H-1000). Images were acquired using a confocal laser-scanning microscope (Leica SP5 inverted confocal microscope). Sequential scanning of the different channels was performed at a resolution of 512 × 512 pixels. The system was equipped with an HC PLAPO CS2 63×1.1. The oil objective was excited with a diode 594-nm laser. Brightness was optimized and applied to the entire image.
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2

Quantifying BM-MSC Adhesion on SLA-DOPA Titanium

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BM-MSCs (2 × 103 cells per mL) were seeded onto SLA or SLA-DOPA titanium discs in 24-well plates with proliferation medium (α-MEM; containing 10% fetal bovine serum and 1% penicillin/streptomycin). These were cultured for 1, 3 or 24 h, fixed in 4% paraformaldehyde solution for 10 min, permeabilized in 0.1% Triton X-100/phosphate buffered saline (PBS), and incubated in 200 μL of 1 μg mL−1 phalloidin-FITC (Sigma, P5282) in PBS for 1 h to label the actin cytoskeleton. The nuclei were labeled with 4′,6-diamidino-2-phenylindole dihydrochloride (DAPI; Cell Signaling Technology, Danvers, MA, USA). Samples were examined by confocal laser scanning microscopy (CLSM, Carl Zeiss, Jena, Germany) at 488 nm wavelength or under UV light. To quantify cell adhesion, BM-MSCs (6 × 103 cells per mL) were seeded onto titanium discs, cultured for 1, 3 or 24 h, washed in PBS three times to remove non-adherent cells, fixed, permeabilized, and nuclei were labeled using DAPI. Cell numbers in three randomly selected light microscope fields (Olympus, Tokyo, Japan; ×10 objective) were calculated using Image-Pro Plus 6.0 software (Media Cybernetics, Silver Spring, Maryland, USA).
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3

Immunofluorescence Staining of HCC Cells

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All the HCC cells used were seeded on cover slides in 24-well plates, incubated overnight and then fixed in 4% paraformaldehyde for 15 min, permeabilized with 1% Triton X-100 for 5 min, blocked in 1% bovine serum albumin (BSA) for 60 min, and incubated with primary antibodies for 60 min at RT, followed by secondary antibodies for 60 min at RT. Nuclei were stained with 4′,6-diamidino-2-phenylindole dihydrochloride (DAPI, Cell Signaling Technology, #4083) at RT for 10 min. Photographs were captured with a laser confocal microscopy (Leica Microsystems AG). Antibodies applied in this experiment are listed in Additional file 2: Table S1.
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4

HUVEC Cytoskeleton and Nuclear Morphology

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After 1, 4, or 7 days of culture, HUVEC nuclei and actin cytoskeleton were stained to visualize cell morphology and location. Samples were fixed with 4 % paraformaldehyde in DPBS for 45 min at 37°C, and then permeabilized and blocked for 1 hour at room temperature in DPBS containing 0.25 % Triton X-100 (DPBST) and 1 wt% bovine serum albumin (BSA, Roche). The cell nucleus and actin cytoskeleton were then stained through incubation with 4’,6-diamidino-2-phenylindole dihydrochloride (DAPI, Cell Signaling Technology, 1:2000) and TRITC-phalloidin (Sigma-Aldrich, 1:200) in DPBST for 1 h at room temperature. Samples were washed with DPBST and imaged using a Leica SPE confocal microscope (n = 3). Nuclear z-position was quantified using CellProfiler, and results were plotted in GraphPad Prism 9.0.[56 (link),58 (link)] Representative images were prepared in Fiji.[65 (link)]
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