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6 protocols using flua np 4f1

1

Influenza A Virus Infection Kinetics

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MDCK cells were seeded on a 24-well plate at a density of 1 × 105 cells/well. 25 (12.5 μM), 1 (12.5 μM, positive control), or DMSO (0.125%, negative control) were mixed with MOI 0.1 of A/PR/8/34 virus and incubated for 30 min prior to the cells being added. At 4, 8, 12, or 24 h post-infection, the cells were lysed in a buffer containing 125 mM Tris-HCl, pH 6.8, 5% sodium dodecyl sulfate, 25% glycerol, 0.1% bromophenol blue, and 10% β-mercaptoethanol and boiled for 5 min. The cell lysates were separated on a 10% polyacrylamide gel. The proteins were transferred to a polyvinylidene fluoride microporous membrane (Millipore, MA, USA). FluA-NP 4F1 (SouthernBiotech) or a goat anti-influenza A viral NS1 antibody (vC-20; Santa Cruz Biotechnology, CA, USA) were used as primary antibodies to detect their respective proteins. A rabbit anti-β-ACTIN antibody (13E5; Cell Signaling, MA, USA) was used as an internal control. The secondary antibodies, horseradish peroxidase (HRP)-conjugated goat anti-mouse IgG (SouthernBiotech) or donkey anti-goat IgG (sc-2020; Santa Cruz Biotechnology), were used as appropriate. The signals were detected using Immobilon Western Chemiluminescent HRP Substrate (Millipore). Signal intensities were measured using ImageJ software, and the protein levels of NP and NS1 were normalized to that of β-actin.
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2

Antiviral Screening of J. multifida Extracts

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MDCK cells were seeded in a 96-well plate (1 × 104 cells/well). H2O, EtOAc, Hex, or CHCl3 extracts from the stems of J. multifida (3.1-25 μg/mL) or (+)-(S)-bakuchiol (3.1-25 μM) were mixed with influenza A virus at a MOI of 0.1 in the infection medium and incubated for 30 min at 37 °C in the presence of 5% CO2. DMSO (0.031-0.25%) was used as the negative control. Each mixture was added to the cells and incubated for 24 h at 37 °C in the presence of 5% CO2. The cells were fixed with 4% paraformaldehyde in PBS for 30 min at 4 °C and then permeabilized by the addition of 0.3% Triton X-100 for 20 min at 25 °C. A mouse antibody for the detection of the NP of A/PR/8/34 (FluA-NP 4 F1; SouthernBiotech, AL, USA) was used as the primary antibody. Alexa Fluor488-conjugated goat anti-mouse IgG (H + L) antibody (Life Technologies, CA, USA) was used as the secondary antibody. Cell nuclei were then stained using diamidino-2-phenylindole (DAPI; Life Technologies). The wells were photographed using a fluorescence microscope (BIOREVO BZ-9000, Keyence, Osaka, Japan), and the percentage of influenza A NP-positive cells per DAPI-positive cells were calculated based on measurements recorded with BZ-H1C software (Keyence).
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3

Bakuchiol inhibits influenza A viruses

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MDCK cells were seeded in a 96-well plate (1 × 104 cells/well). (+)-(S)-Bakuchiol, (−)-(R)-bakuchiol, or ME was mixed at a concentration of 12.5–50 μm with influenza A virus (A/PR/8/34, A/CA/7/09, or A/Aichi/2/68) at an MOI of 0.1 in the infection medium and incubated for 30 min at 37 °C under 5% CO2. DMSO (0.125–0.5%) was used as the negative control. Each mixture was added to the cells and incubated for 24 h at 37 °C under 5% CO2. The cells were then fixed with 4% paraformaldehyde in PBS for 30 min at 4 °C before permeabilization with 0.3% Triton X-100 for 20 min at room temperature. Mouse antibodies detecting the NP of A/PR/8/34 and A/Aichi/2/68 (FluA-NP 4F1, SouthernBiotech) or the NP of A/CA/7/09 (AA5H, AbD Serotec) were used as primary antibodies, as appropriate (26 (link)). Horseradish peroxidase-conjugated goat anti-mouse IgG (SouthernBiotech) was used as the secondary antibody. To visualize the infected cells, TrueBlue peroxidase substrate (KPL) was added and incubated for 15 min; color development was terminated by washing with H2O. The wells were photographed under a microscope, and the stained cells were counted. Each half-maximal (50%) inhibitory concentration (IC50) value was then calculated based on the cell numbers.
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4

Quantitative Western Blot Analysis

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The cells were lysed in a buffer containing 125 mm Tris-HCl, pH 6.8, 5% SDS, 25% glycerol, 0.1% bromphenol blue, and 10% β-mercaptoethanol and boiled for 5 min. The cell lysates were then separated on a 10% polyacrylamide gel. The proteins were transferred to a polyvinylidene fluoride microporous membrane (Millipore). FluA-NP 4F1 (SouthernBiotech), a goat anti-influenza A viral NS1 antibody (vC-20, Santa Cruz Biotechnology, Inc.), a rabbit anti-firefly luciferase polyclonal antibody (MBL, Nagoya, Japan), and a rabbit anti-Renilla luciferase polyclonal antibody (MBL) were used as primary antibodies to detect their respective proteins. A rabbit anti-β-actin antibody (13E5, Cell Signaling) was used as an internal control. The secondary antibodies, horseradish peroxidase-conjugated goat anti-mouse IgG (SouthernBiotech), donkey anti-goat IgG (sc-2020, Santa Cruz Biotechnology), or goat anti-rabbit IgG (KPL), were used as appropriate. The signals were detected using Western Lightning ECL Pro (PerkinElmer Life Sciences). Signal intensities were measured using ImageJ software, and the protein levels of firefly and Renilla luciferase were normalized to that of β-actin.
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5

Comparative growth analysis of scPR8-RBD-M2 and WT PR8

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To assess the growth of scPR8-RBD-M2 compared to the wild-type (WT) PR8, MDCK and MDCK-HA cells were infected with the viruses at an MOI of 0.01 and maintained in Opti-MEM® containing 2 µg/mL of TPCK-treated trypsin at 37 °C. Cell supernatants were collected at indicated time points. For virus titration, MDCK-HA cells grown in flat-bottom 96-well plates were inoculated with serial 10-fold dilutions of scPR8-RBD-M2 and incubated at 37 °C for 72 h. scPR8-RBD-M2-infected MDCK-HA cells were observed microscopically with fluorescent conjugated secondary antibodies recognizing monoclonal antibodies (MAb) against influenza virus NP (FluA-NP 4F1) (Southern Biotech, Birmingham, AL, USA). Virus titers were calculated by Reed and Muench method (TCID50/mL) [17 (link)].
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6

Influenza A Viral Infection Assay

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MDCK cells were seeded on a 96-well plate at 1 × 104 cells/well. 25 (3.1‒12.5 μM) were mixed with A/PR/8/34 or A/WSN/33 viruses at an MOI of 0.1 in the infection medium and incubated for 30 min at 37°C in the presence of 5% CO2. Each mixture was added to the cells at 37°C in the presence of 5% CO2. DMSO (0.031–0.125%) or 1 (3.1–12.5 μM) were used as negative or positive controls, respectively. After influenza A viral infection for 24 h, the cells were fixed with 4% paraformaldehyde in phosphate-buffered saline (PBS) for 30 min at 4°C and subsequently permeabilized by the addition of 0.3% Triton X-100 for 20 min at 25°C. A mouse primary antibody was used to detect the NP of A/PR/8/34 or A/WSN/33 viruses (FluA-NP 4F1; SouthernBiotech, AL, USA). Alexa Fluor488-conjugated goat anti-mouse IgG (H + L) antibody (Thermo Fisher Scientific) was used as the secondary antibody. Cell nuclei were then stained using diamidino-2-phenylindole (DAPI) (Thermo Fisher Scientific). Wells were photographed using a fluorescence microscope (BIOREVO BZ-X700; Keyence, Osaka, Japan). The proportion of influenza A NP-positive cells per DAPI-positive cells was calculated based on measurements recorded using BZ-X Analyzer software (Keyence).
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