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Platinum sybr green qpcr

Manufactured by Thermo Fisher Scientific
Sourced in United States

The Platinum SYBR Green qPCR is a real-time PCR reagent kit designed for the quantitative detection of DNA sequences. It contains a proprietary thermostable DNA polymerase and SYBR Green I dye for the fluorescent detection of PCR products during the amplification process.

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3 protocols using platinum sybr green qpcr

1

Dexamethasone and Cytokine-based Cancer Therapy

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Dexamethasone (Dex), chloroquine, Matrigel (cat# 126–2.5) and human glycosylated IL2 (Sigma-Aldrich Co). Horse serum (HS), DMEM/F12, Lipofectamine 2000 and TRIzol (Life Technologies). Fetal bovine serum (FBS) (Atlanta Biologicals). RPMI 1640 (LONZA). Smartscribe and Blueprint Onestep RT-PCR Takara kit (Clontech Laboratories); Platinum SYBR Green qPCR (Invitrogen), PfuUltra DNA polymerase (Stratagene). Human TGFβ1 (Antigenix America Inc). IL2 was from MGH-DF/HCC Recombinant Protein Core (Boston, MA). Human IL-4 (Shenandoah Biotechnology Inc). Anti-HER2 (Trastuzumab), humanized Antibody (BioVision Inc.) and PNGase F from New England Biolabs.
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2

Quantifying Gene and miRNA Expression in Glioma Cells

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Total RNA was extracted from the cells using the Trizol Reagent and its concentration and quality was measured using NanoDrop 2000. The total RNA was reversely transcripted into cDNA using the SuperScript III Reverse Transcriptase (Invitrogen). The primers (Shh, Ihh, Dhh, E-cadherin, MMP-2, and GAPDH) for reverse transcription and qPCR of miR-338-5p and U6 (Table 1) were synthesized by Guangzhou Ruibo Biotechnology Co., Ltd. (Guangzhou, China). Invitrogen's Platinum SYBR Green qPCR SuperMix-UDG kit was used in this reaction. The specificity of SYBR Green qPCR was validated using melt curve analysis. qPCR was performed using the following: reagent used was 10 μL of Platinum® SYBR® Green qPCR (Invitrogen), 1 μL of forward primer, 1 μL of reverse primer, 2 μL of cDNA template, and 6 μL RNase free ddH20. U6 and GAPDH were used as controls. Real-time PCR reaction conditions were set as follows: Roche LighterCycler 480 denaturation was set to 95°C for 30 seconds and cycle amplification conditions were set to 95°C for 5 seconds and 60°C for 30 seconds for a total of 40 cycles. The 2∆∆CT method was used to calculate the relative expression level of miR-338-5p, Shh, Ihh, Dhh, E-cadherin, and MMP-2 in glioma cells.
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3

Osteogenic Differentiation of BMSCs

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BMSCs were treated with osteogenic medium (control), osteogenic medium containing 0.5 mM of DMOG, osteogenic medium containing 10 μM of Y-27632, or osteogenic medium containing 0.5 mM of DMOG and 10 μM of Y-27632 for 1, 3, and 7 days. BMSCs were harvested and the total RNA was isolated using TRIzol (Invitrogen Inc., Carlsbad, CA, USA). The 260/280 nm absorbance ratio was used to determine the purity and concentration of the RNA. The cDNA was synthesized using a SuperScript TM III First-Strand Synthesis System for RT-PCR (Invitrogen Inc., Carlsbad, CA, USA). The primer sequences were: Runx2, forward 5'-TTC AAC GAT CTG AGA TTT GTG GG-3' and reverse 5'-GGA TGA GGA ATG CGC CCT A-3'; Osterix, forward 5'-ATG GCG TCC TCT CTG CTT G-3' and reverse 5'-TGA AAG GTC AGC GTA TGG CTT-3'; and β-actin, forward 5'-GTG ACG TTG ACA TCC GTA AAG A-3' and reverse 5'-GCC GGA CTC ATC GTA CTC C-3'. Analysis was performed using an ABI prism 7000 real-time PCR system (Applied Biosystems, Foster City, CA, USA) and Platinum SYBR Green qPCR (Invitrogen Inc., Carlsbad, CA, USA). All reactions involved initial denaturation at 95°C for 2 min followed by 40 cycles of 95°C for 15 s, 54°C for 30 s, and 65°C for 20 s. The 2 -ΔΔCt method was used to represent the relative mRNA expression of target genes. β-actin was used as an internal control.
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