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2 protocols using fitc or tritc phalloidin

1

Integrin and eIF4E Localization Assay

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Cells were seeded on to glass coverslips in 24-well plates at 10,000/cm2 and exposed to different concentrations of ribavirin analogs or ribavirin (20 or 50 μg/mL) for 1, 3 and 7 days of culture. At each time-point, cells were fixed with 3% paraformaldehyde (PFA) in PBS and washed with PBS containing 0.5% BSA. They were permeabilized with 0.1% Triton X100 in PBS and incubated for 2 h at room temperature with anti-αv integrins (sc-9969, Santa-Cruz) or anti-eIF4E (610270, BD PharMingen) antibodies. After washing, the coverslips were incubated with the appropriate fluorescent secondary antibodies: Alexa Fluor 555-conjugated anti-mouse antibody (A21424, Invitrogen) or Alexa Fluor 488-conjugated anti-mouse antibody (BD Transduction Laboratories). The actin cytoskeleton was stained with FITC- or TRITC-phalloidin (P5282 or P1981, Sigma Aldrich). For each assay, cell nuclei were stained with DAPI (4,6-diamidino-2-phenylindole dihydrochloride, D9542, Sigma Aldrich). Coverslips were mounted in Prolong-Gold Antifade Reagent (P36930, Invitrogen) and examined by laser scanning confocal microscopy (LSM710, Zeiss). Controls, in which primary antibodies were replaced with PBS, were negative. Fluorescence microscopy figures were processed using Fiji software [17 (link)].
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2

Cytoskeletal Visualization in HEp-2 Cells

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HEp-2 cells were seeded onto coverslips at a concentration of 5x10 4 cells/well and allowed to attach overnight. The next day, cells were washed and incubated with an equal amount of cleared bacterial cell lysates for 24 h at 37°C, 5% CO2. After washing with PBS, cells were fixed in 4% paraformaldehyde for 15 min at room temperature. Subsequently, washed cells were permeabilized with 0.1% Triton X-100 in PBS for 1 min. The actin cytoskeleton was stained with FITC-or TRITC-Phalloidin (0.5 μg/ml in PBS; Sigma-Aldrich) and mounted on slides using ProLong® Gold Antifade mounting medium containing DAPI (Thermo scientific). Cells were visualized by fluorescence microscopy using an Axiovert II inverted fluorescence microscope (Carl Zeiss) with Axiocam HR and the AxioVision program (Carl Zeiss).
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