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2 protocols using anti batf sc 100974

1

Immunoprecipitation and Immunoblot Analysis

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HEK293T cells were transfected with pcDNA3 encoding FLAG-tagged Jun family proteins and haemagglutinin (HA)-tagged BATF. After 24 h, the FLAG-tagged protein was immunoprecipitated using anti-FLAG (M2)-conjugated agarose (Sigma) and analyzed by immunoblot with the anti-FLAG (M2, Sigma) and anti-HA (16B12, Covance) antibodies. Endogenous proteins in T cell lysates were analyzed by immunoblot with anti-IRF4 (sc-6059, Santa Cruz), anti-BATF (sc-100974, Santa Cruz), anti-JunB (sc-46, Santa Cruz), anti-c-Jun (sc-1694 and sc-74543, Santa Cruz), anti-JunD (sc-74, Santa Cruz), and anti-β-actin (sc-47778, Santa Cruz) antibodies.
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2

Nuclear Extraction and Immunoblot Analysis

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Nuclear extracts were prepared using NE-PER Nuclear and Cytoplasmic Extraction Reagents (Thermo Fisher Scientific). The antibodies used for the immunoblot analyses were anti-Chd4 (A301-081A; Bethyl), anti-Mta2 (sc-9447; Santa Cruz Biotechnology), anti-HDAC2 (ab12169; Abcam), anti-Rest (12C11-1B11; Caltech Protein Expression Center), anti-Ring1b (A302-869A; Bethyl), anti-LSD1 (ab17721; Abcam), anti-Runx1 (ab23980; Abcam), anti-Batf (sc-100974; Santa Cruz Biotechnology), anti-Bcl11b (ab18465; Abcam), anti-Vim (ab20346; Abcam), anti-Peg10 (ab181249; Abcam), and anti-Lamin B (sc-6217; Santa Cruz Biotechnology).
Because of the low recovery of Runx1 in co-immunoprecipitation with Bcl11b complexes from ILC2/b6 cells, independently made antibodies against Runx1 and Runx3 from the Weizmann Institute (Levanon et al., 2014 (link)) were also tested for immunoblotting. While showing higher Runx3 in total nuclear extracts of ILC2/b6 cells, co-immunoprecipitation results for Runx1 and Runx3 (data not shown) were similar to those shown for Runx1 using ab23980 in Fig. 4 D
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