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6 protocols using geneporter

1

HO-Luc Plasmid Transfection and Adeno-HO Viral Infection

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The HO-Luc plasmid was transfected using GenePORTER (Genlantis, Cat # T201007) and concomitantly infected with adeno-HO virus in either 293 T-HO-CAT cells or 293 T cells. At each time point, cells were taken of the plate and one aliquot of it was used to extract the DNA to be used for PCR to assay cleavage and repair. The rest of the cells were assayed for luminescence using Luciferase Assay system (Promega, Cat # E1501). GFP fluorescence was used to normalize the luminescence values. Both luminescence and fluorescence were measured by Synergy 4 plate reader by BioTEK instruments.
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2

Mutagenesis Induced by Z-DNA Structures

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Mutagenesis was done as we described earlier7 (link). COS-7 cells were transfected with the Z-DNA-forming plasmids, pUPZ1, pUPZ2 or the control plasmid pUCON, using GenePORTER (Genlantis) according to the manufacturer’s recommendations. After 48 h, the amplified plasmids were recovered by the method of Hirt46 (link). After treatment with DpnI to remove those plasmids that were not replicated in the COS-7 cells, the plasmids were transfected into DH5α cells or NEB Stable cells (New England BioLabs, cat. no. C3040H) to detect the LacZ mutants using a blue–white screen. Differences in mutation frequencies were analysed using two-tailed Student’s t-tests (unequal variance) from three independent experiments. DNA sequencing of the mutation reporter plasmids was carried out with the upstream sequencing primer 548: GGTGATGACGGTGAAAACCT, which was close to the non-B DNA insert, and in case of larger deletions using primer 201: CGTTTCTGGGTGAGCAAAA.
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3

Transfection and Lysis of 293T Cells for Western Blot

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293T cells were transfected using Gene Porter (Genlantis) with plasmid constructs expressing WT or mutant forms of gB. 48 h after transfection, cells were lysed for 1 h at 4°C in 50 mM Tris pH 7.5, 150 mM NaCl, 1% NP-40, and 1× complete protease inhibitor cocktail (Roche). Lysates were clarified by centrifugation for 30 min at 20,000× g and subjected to native SDS-PAGE and western blotting as described previously [62] (link).
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4

BACE Localization in CHO 695 Cells

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Chinese Hamster Ovary cells stably transfected with the 695 amino acid variety of human APP (CHO 695) were maintained in minimum essential alpha media (αMEM; Invitrogen, Carlsbad, CA, USA) supplemented with 10% fetal bovine serum, 1% glutamine, and 1% penicillin/streptomycin (Invitrogen). The cells were passaged as specified in Balan et al. [19 (link)]. The cells were seeded into 6-well plates at a density of 1.25 × 104 prior to transient transfection. CHO 695 cells at 70% confluence were transfected with GenePorter (Genlantis, San Diego, CA, USA) 24 h after plating, following manufacturer’s instructions. In total, 2 μg DNA (GFP, Homo BACE1, Branchiostoma BACE1, Hydra BACE1, Mnemiopsis BACE 1/2 or Monosiga BACE 1/2) and 10 μL transfection reagent were delivered in 1.0 mL serum-free αMEM for five hours. Transfections were stopped by the addition of 1.0 mL serum-containing αMEM. The visual inspection of GFP controls verified successful transfection. Successful localizations of BACE constructs were confirmed with GFP-tagged versions of each BACE construct. Microscopy was performed on an inverted Nikon DIAPHOT 200 compound light microscope (Melville, NY, USA).
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5

Establishment of Cell Lines for HO Endonuclease Assay

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The 34 bp HO endonuclease target sequence (agatcttttagtttcagctttccgcaacagtata) was cloned in to the HindIII site of the pREP4/CAT shuttle vector just before the chloramphenicol acetyl transferase (CAT) coding sequence and the plasmid was renamed as HO-CAT plasmid. Further, HO-CAT plasmid was transfected in to 293 T cells which maintain the plasmid episomal due to presence of EBNA-1, under hygromycin selection (Hygromycin B/Calbiochem, Cat # 400052). The cell line was named 293 T-HO-CAT. Similarly HEK293 cells were transfected and selected to produce the 3-HO-CAT cell line. Metnase expressing pCAPP-Metnase-V5 plasmid which was prepared in Robert Hromas’ lab was transfected in to 293 T cells and puromycin (Puromycin Dihydrochloride/MP biomedicals, Cat # 100552) selected to produce the Metnase over expressing 293 T stable cell line. Subsequently, HO-CAT plasmid was transfected into these cells to produce the Met-T-HO-CAT cell line and maintained under dual selection of hygromycin and puromycin. GenePORTER (Genlantis, Cat # T201007) was used as the transfection reagent for all the above mentioned transfections. All the three cell lines were cultured using DMEM with 10% FCS as growth medium at 5% CO2 and 37°C.
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6

Adenosine Receptor Sensor Cells Generation

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Mouse A1 receptor cDNA was amplified by PCR and subcloned into pcDNA3.1 (Life Technologies, Carlsbad, CA). A DNA fragment containing Gqi5 was generated by PCR (Conklin et al. 1993 (link)) and subcloned into pME18S. Adenosine sensor cells were generated by transfecting HEK293 cells (ATCC, Manassa, VA) with these two plasmids using GenePORTER (Genlantis, San Diego CA) and by selecting stable transfectants showing calcium response to adenosine with G418 (Life Technologies) and calcium imaging. The adenosine sensor cells were maintained in DMEM/F12 (Life Technologies) containing 10% fetal calf serum and antibiotics (50 U/ml penicillin and 50 μg/ml streptomycin, Life Technologies).
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