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6 protocols using anti cdk2 antibody

1

Antibody Procurement for Signaling Assays

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PFD was purchased from Tokyo Chemical Industry Co., Ltd. (Tokyo, Japan). Rabbit monoclonal anti-p21 and anti-CDK2 antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). Rabbit polyclonal anti-phospho-Akt (Ser473) and anti-Akt antibodies were purchased from Cell Signaling Technology. Mouse monoclonal anti-β-actin (clone AC-15) antibody was purchased from Sigma-Aldrich Co. (St. Louis, MO, USA). Rabbit polyclonal anti-PSA antibody was purchased from Dako Cytomation (Copenhagen, Denmark). Rabbit polyclonal anti-AR (N-20) antibody was purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA).
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2

Pluripotency and Lineage Marker Antibodies

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Anti-NANOG (PE conjugate), anti-OCT4 (Alexa Fluor 647 conjugate and PerCp-Cy5.5 conjugate), and anti-SOX2 (PerCp-Cy5.5 conjugate) antibodies, plus their isotype control antibodies, were purchased from BD Biosciences. Anti-cleaved-caspase 3 and anti-histone 3 antibodies detecting phosphorylated Serine 10 were purchased from Cell Signaling (USA). Anti-CDK2 antibodies were obtained from Cell Signaling and from Santa Cruz Biotechnology (San Diego, CA, USA). Anti-SOX1 (NorthernLights conjugate, NL-493), anti-OTX-2 (NL-557), anti-Brachyury (NL-557), anti-HAND1 (NL-637), anti-GATA4 (NL-493), and anti-SOX17 (NL-637) antibodies were purchased from R&D Systems (Abingdon, Oxon, UK). Nocodazole and NU6140 (Sigma-Aldrich Chemicals, St. Louis, MO, USA) were dissolved and diluted in DMSO (Sigma-Aldrich Chemicals).
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3

Quantitative CDK2 Kinase Activity Assay

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Native protein was prepared as described previously (14 (link)). Five hundred μg of native protein were incubated with anti-CDK2 antibody (Cell Signaling Technology; Danvers, MA) overnight and then incubated with Protein A/G Plus agarose beads (Santa Cruz Biotechnology) with constant agitation for an additional 3 hr. The agarose beads were washed and resuspended in kinase assay buffer (20 mM Tris-HCl, pH 7.4, 120 mM NaCl, 8 mM MgCl2, 0.8 mM dithiothreitol) containing 40 μM ATP and 50 μg/ml of CtIP peptide substrate (PTRVSSPVFGAT; a.a. 322-333) synthesized by Selleck Chem (Houston, TX). The kinase reaction was carried out at 30°C for 45 min. Phosphorylation of the peptide substrate correlated positively with ADP generated by the kinase activity of immunoprecipitated CDK2. The level of ADP was measured by the ADP-Glo Kinase Assay kit and a TD-20/20 luminometer (Promega; Madison, WI).
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4

Immunohistochemical Analysis of Cell Cycle Proteins

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Paraffin-embedded samples were cut as 5-μm sections and processed for immunohistochemistry. Tissue sections were prepared for antigen retrieval using microwave treatment in citrate buffer (pH 6.0) and then incubated with anti-NCKAP1 antibody (Proteintech, Rosemont, IL, USA), anti-CDK2 antibody (Cell Signaling Technology, Danvers, MA, USA), or anti-CDK4 antibody (Cell Signaling Technology). Immunostaining was performed using the Envision System with diaminobenzidine as substrate (Dako Cytomation, Glostrup, Denmark). Images were viewed and assessed using an Eclipse 80i microscope (Nikon, Tokyo, Japan). Hematoxylin and eosin (H&E) staining was performed using a Hematoxylin 7211 and Eosin-Y Alcoholic kit (Thermo Fisher Scientific, Inc, Shanghai, China).
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5

Western Blot Analysis of Cell Cycle Regulators

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Western blot analysis was performed according to previously described procedures16 . We used primary antibodies, including anti-bile acid receoptor (NR1H4) antibody, anti-SHP antibody (Santa Cruz, CA), anti-phospho-Rb antibody, anti-cyclin D1 antibody, anti-cyclin E1 antibody, anti-CDK2 antibody, anti-CDK4 antibody, anti-CDK6 antibody, anti-p21Waf1/Cip1 antibody, anti-p27Kip1 antibody, and anti-β-actin antibody (Cell Signaling Technology) according to the manufacturer’s recommended dilutions.
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6

Immunohistochemical Evaluation of RCC Biomarkers

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TMA was constructed using 85 cases of formalin-fixed, paraffin-embedded RCC samples. IHC was performed on TMA to evaluate WTAP and CDK2 protein expression. The tissue samples were stained with the following primary antibodies respectively: anti-WTAP antibody (Abcam, USA) and anti-CDK2 antibody (Cell Signaling Technology, USA). Standard staining protocols were used [24 (link)]. Stained tissues were scored for staining intensity (SI) and the percentage of positive cells (PP). SI was scored on a scale of 0 to 3 (0, negative staining; 1, weak staining; 2, moderate staining; 3, strong staining) and PP was scored into five categories: 0 (0% positive cells), 1 (< 10%), 2 (11% to 50%), 3 (51% to 80%) or 4 (> 80%). The final staining score was calculated by multiplying SI and PP score, resulting in a score value ranging from 0 to 12. The positive level of immunohistochemical staining was scored by two urologists and patients with different scores were divided into low- (0–7) and high-staining (8–12) groups.
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