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749 protocols using bca assay kit

1

Western Blot Analysis of EMT Markers

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Tissues and cells were lysed in RIPA buffer supplemented with protease inhibitor and phosphatase inhibitor (Thermo Scientific). The protein concentration was evaluated by using BCA Assay Kit (Biyuntian) and then was denatured by using loading buffer (5×) at 100°C for 5 minutes. Proteins with equal amounts (30 μg) were separated by SDS‐PAGE. Primary antibodies used were listed as follows: anti‐E‐cadherin antibody (1:1000, #3195; Cell Signaling Technology); anti‐vimentin antibody (1:1000, #5741; Cell Signaling Technology); anti‐ZEB1 antibody (1:1000, #3396; Cell Signaling Technology); and anti‐SIX‐1 antibody (1:1000, #16960; Cell Signaling Technology). Then, the PVDF membranes were incubated with antimouse or anti‐rabbit HRP‐conjugated secondary antibody (1:1000; ZSGB‐bio). An anti‐β‐actin antibody (1:5000, A5441; Sigma‐Aldrich) was used as an internal control.
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2

Purification of Hexahistidine-tagged CrlTA Protein Complexes

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Protein CrlTA complexes with a hexahistidine tag at the N-terminus of the CrlTA complex without any tag were purified using E. coli BL21 with pET28b-His-crlTA and pET28b-crlTA. Strains were grown in LB with kanamycin (50 μg/ml) and were induced with 1 mM IPTG at OD600 ~ 0.1 for 5 h. Cells were collected and resuspended in lysis buffer [50 mM potassium phosphate buffer (pH 8.0), 300 mM NaCl, and protease inhibitor cocktail (Sigma-Aldrich, United States)]. Samples were sonicated using a Sonic Dismembrator (Ningbo Dongzhi, China) at level 2 for 5 min on ice. Ni-NTA resin (Qiagen) was used according to the manufacturer’s protocol. Purified proteins were desalted by passage on disposable Sephadex G-25 prepacked PD-10 columns pre-equilibrated in 20 mM Tris–HCl buffer (pH 8.0), and the protein concentration was measured by the Bi Yuntian BCA assay kit (Haimen, Jiangsu, China). Tricine–SDS-PAGE was performed as previously described (Baba et al., 2006 (link)). A total of 20 μg of protein from each sample was loaded for Tricine–SDS-PAGE.
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3

Hippocampal and Prefrontal Cortex Biomarker Assay

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Mice were sacrificed by cervical dislocation, and their hippocampal and PFC tissues were immediately dissected from the left and right brains at 4°C and placed in PBS buffer (0.01 M). The hippocampal and PFC tissues were separately placed into EP tubes and stored at −80°C until use in the biomarker assays. The hippocampal and PFC samples were lysed and homogenized using tissue lysis buffer (containing protease and phosphatase inhibitors) in an ice bath for at least 30 min. Next, the total homogenate was centrifuged at 13,000 rpm for 15 min at 4°C. The supernatants were collected, divided into new tubes, and stored at −80°C for use in Western blot and oxidation-associated biomarker assays.
The total protein concentration in each sample was quantified using a bicinchoninic acid (BCA) assay kit (Shanghai Biyuntian Biotechnology Co. Ltd.) based on a standard curve. The MDA, GSH-PX, and T-AOC contents were determined using MDA, GSH-PX, and T-AOC kits, respectively, according to the manufacturer's recommendations with a slight modification in dosage. The MDA content was expressed as nmol per milligram of protein (nmol/mg), and the GSH-PX and T-AOC activities were expressed as units per milligram of protein. Apart from these methods, the other protocols utilized were basically similar to those described above for serum detection.
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4

Western Blot Analysis of Protein Expression

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Proteins were extracted from ventricular tissue using lysis buffer and measured using a BCA assay kit (Beyotime). SDS-PAGE was applied to separate the total protein (50 µg), which was then transferred to PVDF membranes. The membranes blocked and incubated with primary and secondary antibodies against POLR1D (1:400, ab243591, rabbit polyclonal, Abcam); Cleaved caspase-3 (1:500, ab32042, rabbit monoclonal, Abcam); E-cadherin (1:500, 20874-1-AP, rabbit polyclonal, Proteintech); N-cadherin (1:500, 22018-1-AP, rabbit polyclonal, Proteintech); p-PI3K (1:500, #4228, rabbit polyclonal, Cell Signaling Technology); PI3K (1:500, R22768, rabbit polyclonal, ZenBio); p-AKT (1:500, #4060S, rabbit polyclonal, Cell Signaling Technology); AKT (1:500, #4691, rabbit polyclonal, Cell Signaling Technology) and GAPDH (1:2000, sc-47,724, mouse monoclonal, Santa Cruz) were using the 5% skimmed milk. Then, membranes were washed with a solution of Tris-buffered saline and Tween-20 before being treated with a secondary antibody conjugated to horseradish peroxidase for two hours at room temperature. For repeated use of PVDF membrane, antibody stripping solution (WB6500, NCM Biotech, Suzhou, China) was used. ECL reagents were used to identify protein bands (Amersham Biosciences, UK). ImageJ software was used to examine the protein bands, and GAPDH was employed as an internal control.
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5

Spectrophotometric Tyrosinase Activity Assay

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Tyr activity was measured using a slightly modified spectrophotometric method.[ 21 ] After the protein content was quantified using a bicinchoninic acid (BCA) assay kit (Beyotime Institute of Biotechnology, Haimen, China), the volume of supernatant containing same concentration (10 μg) of total protein was set to 100 μL by 0.1 M PBS (pH 6.8). The mixture was then added to each well on a 96-well plate and mixed with 100 μL of 2 mg/mL levodopa (L-DOPA). After incubation at 37°C for 1 h, absorbance was measured at 475 nm using a multifunctional microplate reader. Tyr activity was normalized to lysate total protein and described as a percentage change as compared with vehicle-treated controls.
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6

Western Blot Analysis of Metabolic Regulators

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Cells were washed twice with cold phosphate buffer saline (PBS) and lysed using cell lysis buffer. Protein concentration was measured with a BCA assay kit (Beyotime). Protein extracts were loaded and separated by 10% SDS-polyacrylamide gel electrophoresis and transferred to polyvinylidenefluoride membranes. Membranes were incubated with specific primary antibodies overnight at 4°C after blocking in 5% non-fat milk as follows: anti-c-Myc, anti-HIF-1α, anti-HK2, anti-Bcl-2, anti-LDHA, anti-phosphorylated STAT3 (Tyr705) and anti-STAT3 (1:1000, CST); anti-Glut1, anti-Glut3, anti-PFK, and anti-PKM2 (1:1000, Abcam); anti-β-actin (1:4000, Sigma). The membranes were incubated with horseradish peroxidase conjugated secondary antibody for 1 h at room temperature, and visualized with enhanced chemiluminescence. The aimed protein levels were normalized to the level of β-actin.
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7

Exosome Isolation from Cell Culture

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The exosomes were depleted from FBS by a 16 h ultracentrifugation at 1 × 106 g at 4°C in a Beckman Coulter Avanti-J-25I centrifuge (Beckman Coulter, Brea, CA, USA). SKOV3 and SKOV3/DDP cells were incubated in exosome-free RPMI 1640 medium complemented with 10% FBS for 48–72 h; exosomes were extracted by an ultracentrifugation. Briefly, cell culture medium was sequentially centrifuged at 300g for 10 min, 2000g for 15 min and 12 000g for 30 min to remove floating cells and cellular debris, and submitted to a second ultracentrifugation in the same conditions. The 30 µl re-suspended exosome was collected in an Eppendorf tube and lysed with equal volume in radioimmunoprecipitation assay buffer. The protein concentration in exosome was determined using bicinchoninic acid (BCA) assay kit (Beyotime, Shanghai, China).
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8

STAT5 Phosphorylation Assay in PBMCs

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PBMCs were washed with PBS, and lysed with RIPA buffer (Solarbio, R0010), and quantified using a BCA assay kit (Beyotime, P0012) according to the manufacturer’s instructions. The samples were then boiled 5 minutes at 95 °C in a 5 × protein loading buffer (Meilunbio, MA0003-D). An equivalent quantity of protein samples was loaded onto a 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis gel (Beyotime, P0012AC) and subsequently transferred to a polyvinylidene fluoride (PVDF) membrane (Merck Millipore, IPVH15150) using WB transfer buffer (Solarbio, D1060). After blocking non-specific binding with 5% skimmed milk (BioFroxx, 1172GR500), rabbit anti-STAT5 (phospho Y694) monoclonal antibody (Abcam, ab32364) and mouse β-actin primary antibody (Abcam, ab8226) were incubated overnight at 4°C. After washing with Tris-buffered solution (Solarbio, T1080) for three times, the blots were incubated with species-specific secondary antibodies (Abcam, ab6721/ab6728) for two hours at room temperature. After five additional washes with Tris-buffered solution containing 0.01% Tween 20, the protein bands were visualized using an ECL reagent kit (Solarbio, PE0010) based on the manufacturer’s instructions (Carestream, USA). Images were captured with a Chemiluminescence Imaging System (CLINX, ChemiScope 6100 Touch, China).
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9

Astrocyte Protein Extraction and Analysis

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The RIPA lysis buffer (Beyotime,
Shanghai, China) was used to extract proteins from the astrocytes
according to the instruction of the manufacturer, followed by protein
quantification using a BCA assay kit (Beyotime, Shanghai, China).
For each sample, 30 μg of total protein was loaded and separated
by 12% SDS-PAGE, followed by being transferred to the polyvinylidene
difluoride (PVDF) membrane. The membrane was subsequently incubated
with antibodies against iNOS (1:1000, Abcam, USA), COX-2 (1:1000,
Abcam, USA), p-CREB (Ser133) (1:1000, Cell Signaling Technologies,
USA), CREB (1:1000, Cell Signaling Technologies, USA), and BDNF (1:1000,
Abcam, USA), using β-actin as a negative control. The pictures
were taken and analyzed using Image J.
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10

Western Blot Analysis of Protein Expression

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RIPA containing protease inhibitors (Beyotime Institute of Biotechnology) was adopted to extract the total proteins on ice. Total protein concentration was quantified using BCA assay kit (Beyotime Biotechnology), equal amounts of proteins (50 μg) were separated by 10% SDS-PAGE, and transferred onto PVDF membranes (EMD Millipore). Then the membranes were blocked in 5% non-fat milk to block the non-specific antigen, and then the primary antibodies were incubated at 4°C at room temperature for 1.5 h overnight with anti-ING4 antibody (cat. no. ab113425; dil 1:1,000), anti-Wnt1 (cat. no. ab15251; dil 1:1,000) anti-β-catenin (cat. no. ab16051; dil 1:1,000) and anti-GADPH antibody (cat. no. ab125247; dil 1:3,000) all from Abcam. After the membranes were washed with TBST, the corresponding secondary antibody was incubated with HRP-conjugated (dil 1:4,000; Abcam) at room temperature for 2 h. Enhanced chemiluminescence solution (Pierce; Thermo Fisher Scientific, Inc.) was adopted to visualize the protein bands and then were analyzed with AlphaEase FC 4.0.1 software (ProteinSimple).
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