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40 protocols using raw264

1

Modulating macrophage polarization with GAN

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Mouse mononuclear macrophage lines RAW264.7 (Procell Biotechnology, Wuhan, China) were chosen for study, which were cultured in a three-gas incubator using special media (Procell Biotechnology, Wuhan, China). After the cells grew to logarithmic phase, their viability was assayed by Trypan blue staining. The macrophages were divided into DMSO, IL-4, GAN-L and GAN-H (10, 20 μM) groups. The DMSO group served as the control, while in the IL-4 group, M2 polarization was induced by 10 ng/ml recombinant IL-4 protein (Abcam, USA) [13 (link)]. In the GAN groups, the macrophages were pretreated with GAN for 12 h, and then M2 polarization was induced by IL-4.
During further experiments, we co-cultured mouse gastric cancer MFC (Procell Biotechnology, Wuhan, China) with the RAW264.7 macrophages, in order to observe the M2 polarization effect induced by tumor cells. The cells were divided into DMSO, IL-4, MFC, GAN-L and GAN-H (10, 20 μM) groups. In the GAN groups, the cells were pretreated with GAN for 12 h, and then M2 polarization was induced by IL-4.
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2

Culturing RAW264.7 Macrophages in DMEM

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The macrophages, RAW264.7, were from Procell Life Science & Technology. The RAW264.7 macrophages were cultured in high-glucose DMEM, containing 10% fetal bovine serum (FBS) [24 (link)]. Cells were cultured at 37°C and 5% CO2. The macrophages were seeded 24 h before the experiments.
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3

LPS-induced Inflammatory Response in Mouse and Human Macrophages

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RAW 264.7 (a mouse-derived macrophage cell line) and THP-1 (a human monocytic leukemia cell line) cells were purchased from Procell Life Science Technology Co. Ltd. (Wuhan, China). Cells were cultured at 37 °C with 5 % CO2. The culture medium for RAW 264.7 cells was DMEM supplemented with 10 % FBS and 1 % penicillin-streptomycin. RAW 264.7 cells were seeded in a complete culture medium in 6-well plates at a density of 5 × 105 cells/well. After overnight incubation, cells were treated with LPS (Solarbio, L8880) (1 μg/mL) for 24 h.
The culture medium for THP-1 cells was RPMI 1640 supplemented with 10 % FBS, 1 % penicillin-streptomycin, and 0.05 mM β-mercaptoethanol. THP-1 cells were also seeded in 6-well plates at a density of 5 × 105 cells/well. THP-1 cells were differentiated into macrophages by incubating with 100 ng/mL phorbol 12-myristate 13-acetate (MultiSciences, CS0001) for 48 h. Then, cells were treated with LPS (1 μg/mL) for 24 h.
The other RT-qPCR steps were the same as those used in the clinical cohort. Table S2 lists the primer pairs used in the experiment.
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4

Cell Culture of Macrophages and HUVECs

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Mouse macrophages cell line (Raw 264.7) and human umbilical vein endothelial cells (HUVECs) were purchased from the Procell Life Science&Technology Company (Wuhan, China). Raw 246.7 cells and HUVECs were cultured with DMEM high-glucose. All medium supplemented with 10% FBS and 1% penicillin/streptomycin (P/S, Beyotime). Moreover, all cells were cultured in a humid incubator at 37 °C and a CO2 level of 5%.
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5

Cell line maintenance protocol

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All cell lines used in this study were purchased from Procell Biotech (Wuhan, China).
Human liver cancer cells (HepG2), mouse mononuclear macrophage leukaemia cells (RAW 264.7), human embryonic kidney cells (293T) and mouse liver cancer cells (HepA1-6) were maintained in 10% FBS, 100 μg/mL penicillin and 100 mg/mL streptomycin in complete DMEM. Mouse liver cancer cells (H22) were cultured in complete 1640 medium. All of the above cell lines were cultured at 37 °C in a humid environment containing 5% CO2.
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6

Exosome-Mediated Macrophage Polarization

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Mouse cardiac myocytes line of HL-1 was purchased from Shanghai Zhongqiao Xinzhou Biotech (ZQ0920; Shanghai, China) and mouse bone marrow derived macrophages line of RAW 264.7 was purchased from Procell (CP-M141, China). HL-1 cells and RAW 264.7 cells were cultured in DMEM culture medium contained 10% FBS and 1% penicillin/streptomycin (P/S; E607011, Sangon, China) at 37 °C in an atmosphere of 95% air and 5% CO2.
To explore the effect of ferroptosis on exosome derived from cardiac myocytes, HL-1 cells were maintained at hypoxic conditions with 7% O2 and treated with 50 µM ferrostatin-1 (Fer-1), a ferroptosis inhibitor, for 16 h. HL-1 cells treated with PBS as control. Later, culture supernatants were harvested for exosome isolation.
To explore the role of Wnt/β-catenin in exosome-mediated macrophage polarization, RAW 264.7 cells were treated with 10  µM IWR-1 (681669, Sigma-Aldrich), a Wnt/β-catenin signaling pathway inhibitor, for 48 h. Later, Wnt expression was detected by RT-qPCR and western blot.
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7

Isolation and Characterization of Multiple Myeloma Cells

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Four MM cell lines (MM.1S, RPMI8226, KMS11, and U266) and monocytic osteoclast progenitor cell line (RAW264.7) were purchased from Procell (Wuhan, China). MM cell lines and RAW264.7 cells were incubated in RPMI-1640 or DMEM medium (Meilunbio, China), which contained 10% FBS (ExCell, China), penicillin and streptomycin. 5% CO2 at 37 °C was used to culture all cells. From September 2019 to January 2021, paraffin sections of bone marrow samples of 24 MM patients and 7 iron deficiency anemia (IDA) patients were obtained from the First Affiliated Hospital of Fujian Medical University. And the percentage of CD138 + cells in the bone marrow of MM patients was obtained from the pathology report. Primary plasma cells were isolated from bone marrow specimens of patients with MM and healthy donors using anti-CD138 MicroBeads (Miltenyi, Germany) and immediately frozen in − 80 °C until the subsequent extraction of RNA. The Ethics Committee of the First Affiliated Hospital of Fujian Medical University approved this study. According to the Declaration of Helsinki, informed consent was obtained.
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8

Cell Culture Protocols for Various Cell Lines

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The HEK293F cell line (Thermo-Fisher, USA) was cultured in a CD05 medium (Shanghai OPM Biosciences, China) at 37°C and 7.5% of CO2 with continuous shaking at 120rpm in a sterile humidified incubator. Hepa1-6-mGPC3-KO cell model was generated by knocking out murine GPC3 in the Hepa-1-6 cell line. Then, hGPC3 was inserted by genetically engineering Hepa1-6-mGPC3-KO and HEK293T cells to over-express human GPC3 protein. All three cell lines were purchased from KYinno Biotechnology (Beijing, China). The HKB-11 cell line (CRL-12568, ATCC) was cultured in DMEM-F12 medium (Gibco) supplemented with 10% fetal bovine serum (FBS). The AML12 cells (Procell Life Sci. & Tech., Wuhan, China), a murine hepatocyte line, were cultured in DMEM-F12 medium supplemented with 10% FBS, 10µg/mL insulin, 5.5µg/mL transferrin, 5ng/mL selenium, 40ng/mL dexamethasone, 1% penicillin-streptomycin (PS) at 37°C and 5% CO2 in a humidified sterile incubator. Also, MRC5, HEK293T, RAW264.7, and HepG2 lines were procured from Procell (Wuhan, China) and cultured in DMEM medium (Gibco) supplemented with 10% FBS and 1% PS at 37°C and 5% CO2.
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9

Murine Cell Culture and Animal Experiments

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The mouse macrophage line Raw 264.7, mouse preosteoblast cell line MC3T3-E1, and BMSCs were obtained from Procell Life Science & Technology (Wuhan, China). MC3T3-E1 cells were cultured in α-MEM supplemented with 10% FBS, 100 IU/mL penicillin and 100 µg/mL streptomycin. RAW264.7 cells were cultured in DMEM supplemented with 10% FBS, 100 IU/mL penicillin and 100 µg/mL streptomycin. Mouse BMSCs were cultured in mouse MSC Medium (Cyagen) according to the manufacturer’s protocol (Nuwacell, Hefei, China). The cell cultures were maintained in an incubator at 37 °C in a humidified atmosphere with 5% CO2.
C57BL/6J female mice of specific pathogen-free (SPF) quality were purchased from the Model Animal Research Center of Tongji Medical College of Huazhong University of Science and Technology (HUST, Wuhan, China). All mice were housed under controlled conditions, which included room temperature of 25 °C, humidity maintained at 60 ± 10%, and a natural light–dark cycle throughout the study. All animals were treated according to the regulations of Chinese law and the local Ethics Committee. All animal experiments were reviewed and approved by the IACUC of HUST (IACUC Number: 3469).
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10

Establishment and Maintenance of Murine and Human Cell Lines

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MC38 and B16F10 were brought from American Type Culture Collection and were cultured in a complete RPMI-1640 medium. B16F10 cells transfected with Control Double Nickase Plasmid (Scramble B16F10), and B16F10 cells transfected with PD-L1 Double Nickase Plasmids (B16F10PD-L1 KO cells) were established in our previous work19 (link) (a kind gift from Prof. Zhirong Zhang, West China School of Pharmacy, Sichuan University, Chengdu, China), and they were cultured in complete RPMI-1640 medium. CTLL2 (catalog number CL-0331) was purchased from Procell Life Science & Tech-nology.Co.,Ltd, and it was cultured in a complete RPMI-1640 medium with IL-2 (100 U mL−1). A375 (catalog number CL-0014) and LLC (catalog number CL-0140) were brought from Procell Life Science & Tech-nology.Co.,Ltd, and they were cultured in complete DMEM medium. RAW264.7 (catalog number CL-0190) was brought from Procell Life Science & Tech-nology.Co.,Ltd, and it was cultured in complete RPMI-1640 medium. CTLL2-PD1 cell was established by Shanghai Genechem in China, and it was cultured in a complete RPMI-1640 medium with IL-2 (100 U mL−1). All cells were maintained in a humidified atmosphere incubator containing 5% CO2 at 37 °C.
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