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19 protocols using vector novared substrate kit

1

Influenza Antigen Detection in Respiratory Tissue

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Organ cultures of the respiratory tissue were fixed and paraffin embedded for sectioning and the detection of influenza antigen as described previously44 (link). Sections were incubated with HB65 antibody against the nucleoprotein protein for 1 h at room temperature, followed by the addition of biotinylated rabbit anti-mouse antibody. Sections were developed with a Vector NovaRed substrate kit (SK-4800).
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2

Immunohistochemistry Protocol for Tumor FFPE Sections

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Standard IHC protocols were followed on FFPE tumor sections as described [29 (link)]. Tissues were incubated overnight with the indicated primary antibody at 4 °C, followed by biotinylated secondary antibody and HRP streptavidin. Slides were developed using the Vector NovaRED Substrate Kit (Vector Laboratories Inc: Burlingame, CA). Hematoxylin was used as a counterstain. See Table S1 for list of antibodies.
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3

Immunohistochemical Characterization of Thyroid Tissue

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Frozen or formaldehyde fixed paraffin sections of thyroids were blocked
with 5% BSA in PBS, and endogenous peroxidase was inhibited by
incubation with 0.3% H2O2 for 30 min. Anti-TTF-1 (H-190, Santa Cruz
Biotechnology), anti-CD40 (1C10; eBioscience for frozen sections or C-20 (sc975;
Santa Cruz for paraffin sections), anti-human CD3 (rabbit polyclonal, Dako),
anti-CD4 (clone GK1.5, supernatant) or anti-CD8 (clone 53.6, supernatant) were
used as primary Ab. For staining of frozen sections (CD4, CD8 and CD40),
biotinylated anti-rat IgG (Jackson ImmunoResearch Laboratories Inc., West Grove,
PA) was used as secondary Ab (1:500), followed by avidin-HRP binding using a
Vectastain Elite PK-6100 kit (Vector Laboratories, Burlingame, CA). Peroxidase
activity was visualized using a Vector Nova-Red Substrate Kit (Vector). TTF1,
CD3 and CD40 staining of paraffin sections was done by IDEXX RADIL, Columbia,
MO. They were developed with biotinylated anti-rabbit or anti-goat IgG at
previously determined optimal concentrations followed by avidin-HRP and
visualized using diaminobenzidine tetrahydrochloride (DAB) as the chromogen.
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4

Immunohistochemical Analysis of Skin Proteins

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Immunohistochemistry with the Vector®NovaRed™ Substrate kit (Vector laboratories Inc.) and VESTASTAIN®Elite ABC kit (Vector laboratories Inc.) was performed according to the manufacturer’s instructions. Paraffin or frozen 5 µm sections of skin tissue samples were stained with the following antibodies: Phospho- p44/42-ERK (1:100, #9101, Cell signaling), S100A4 (1:500, ab27957, Abcam), MMP2 (1:100, ab37150, Abcam) and MMP9 (1:100, AF909, R&D Systems).
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5

Immunohistochemical Analysis of Human Liver Samples

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De-identified human liver specimens from liver explants were obtained from the Liver Center Tissue Bank at the University of Kansas Medical Center. All studies using human tissue samples were approved by the Human Subjects Committee of the University of Kansas Medical Center.
Immunohistochemistry were performed as previously described [18 (link)]. After deparaffinization and rehydration, antigen retrieval was achieved by heating in a pressure cooker for 5 min in 10 mM of sodium citrate (pH 6). Peroxidase activity was blocked by incubation in 3% H2O2 for 10 min. Sections were rinsed three time in PBS/PBS-T (0.1% Tween-20) and incubated in Dako Protein Block (Dako, Agilent Technologies, Santa Clara, CA) for 10 min. After removal of blocking solution, slides were placed into a humidified chamber and incubated overnight with primary antibodies in blocking buffer (3% normal goat serum in PBS) and incubated over night at 4 °C. After washing, slides were covered with SignalStain Boost IHC Detection Reagent (Cell Signaling Technologies, Boston, MA) for 30 min at room temperature. After washing two times with PBS-T, the Substrate-Chromgen Solution (VECTOR NovaRED, Substrate Kit, Vector Laboratories, Burlingame, CA) was applied, slides were incubated 5–10 min and counterstained with Hemtoxylin. Images were acquired using a Nikon Eclipse 80i microscope (Nikon Americas Inc., Melville, NY).
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6

Immunohistochemical Imaging Protocol

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Immunohistochemistry was performed as previously described (Li et al., 2018 (link); Zhao et al., 2019 (link)). After deparaffinization and rehydration, antigen retrieval was achieved by heating in a pressure cooker for 5 min in 10 mM of sodium citrate (pH6). Peroxidase activity was blocked by incubation in 3% H2O2 for 10 min. Sections were rinsed three time in PBS/PBS-T (0.1% Tween-20) and incubated in Dako Protein Block (Dako, Agilent Technologies, Santa Clara, CA) for 10 min. After removal of blocking solution, slides were placed into a humidified chamber and incubated overnight at 4°C with primary antibodies in blocking buffer (4% normal goat serum in PBS). After washing, slides were covered with SignalStain Boost IHC Detection Reagent (Cell Signaling Technologies, Boston, MA) for 30 min at room temperature. After washing two times with PBS-T, the substrate-chromgen solution (VECTOR NovaRED, Substrate Kit, Vector Laboratories, Burlingame, CA) was applied, and the slides were incubated for 5–10 min and counterstained with hemtoxylin. Images were acquired using a Zeiss Axiolab 5 Digital Lab Microscope (Carl Zeiss AG, Jena, Germany).
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7

Immunohistochemical Analysis of Skin Proteins

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Immunohistochemistry with the Vector®NovaRed™ Substrate kit (Vector laboratories Inc.) and VESTASTAIN®Elite ABC kit (Vector laboratories Inc.) was performed according to the manufacturer’s instructions. Paraffin or frozen 5 µm sections of skin tissue samples were stained with the following antibodies: Phospho- p44/42-ERK (1:100, #9101, Cell signaling), S100A4 (1:500, ab27957, Abcam), MMP2 (1:100, ab37150, Abcam) and MMP9 (1:100, AF909, R&D Systems).
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8

Immunohistochemical Visualization of Oocytes in Ovarian Tissue

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To visualize oocytes within the cultured ovary sections, immunohistochemical staining for germ cell marker MSY2 (Y-box-binding protein 2 YBX2; Gu et al; 1998 (link)) was conducted across ovarian cross sections. Slides were deparaffinized in xylene, rehydrated through a graded series of ethanol solutions and washed in phosphate buffered saline (PBS). Citra Antigen Unmasking Solution (Vector Laboratories, Burlingame, CA) was then used for antigen retrieval. Tissue was washed in PBS, placed in 3% hydrogen peroxide/methanol solution, then blocked using normal horse serum (Vector Laboratories). Sections were then treated with MSY2 polyclonal antibody (1:200, anti-MSY2 NBP2–19422 Novus Biologicals, Littleton, CO) and subsequently developed using the Vectastain Elite ABC Kit (Vector Laboratories) as per manufacture’s protocol. The Vector NovaRED Substrate Kit (Vector Laboratories) was used to detect protein immunostaining, followed by counterstaining with hematoxylin.
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9

Immunohistochemical Analysis of Tumor Markers

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Dissected tumor tissues and metastatic lymph nodes from tumor-bearing nude mice were fixed with 4% PFA and embedded in paraffin. 5-μm thick sections were deparaffinized with xylene and rehydrated in graded ethanol. For the purpose of antigen retrieval, the sections were incubated in sodium citrate buffer (10mM, pH 6.0) at 95°C for 20 min. After blocking with 2.5% goat serum in PBS, the sections were incubated overnight at 4°C with primary antibodies (1:200) for vimentin (rabbit IgG; Cell Signaling Technology, Danvers, MA, USA), ALDH1 (rabbit IgG; Cell Signaling Technology), or PDK-1(rabbit IgG; Enzo Life Sciences, Inc., Farmingdale, NY). For the subsequent steps, sections were stained with VECTASTAIN Universal ABC Elite Kit (PK-7200; Vector Labs, Burlingame, CA) and colors were developed using VECTOR NovaRED Substrate Kit (SK-4000; Vector Labs) according to the manufacture's procedures and briefly counterstained with hematoxylin and observed under a light microscope with a digital camera.
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10

Melanoma Tissue Immunohistochemistry Assay

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Human Malignant melanoma, metastatic malignant melanoma and nevus tissue array (ME1004a and ME1004b, US Biomax, Rockville, MD, USA) were used for immunohistochemistry staining. Antigen retrieval was achieved by microwaving arrays immersed in 1 liter Tris-EDTA buffer (10 mM Tris base, 1 mM EDTA solution, 0.05% Tween 20, pH 9.0) for 30 min. Tissue arrays were treated with 1% H2O2 in water for 15 min and blocked in 10% BSA in Tris-buffered saline for 2 h at room temperature. Anti-Mov10 (1:200) in 10% BSA/Tris-buffered saline or anti-FASN (1:500) in 1% BSA/Tris-buffered saline were applied and incubated at 4 °C overnight. Then, arrays were incubated with biotinylated anti-rabbit (1:500, Vector Lab.) for Mov10 or rabbit anti-mouse (1:200, Vector Lab., Burlingame, CA, USA) for FASN for 1 h at room temperature followed by being incubated with VECTASTAIN ABC kit (PK-4000, Vector Lab.) for 30 min. Mov10 and FANS were visualized by Vector Novared substrate kit (SK-4800, Vector Lab.). The arrays were counterstained with hematoxylin for 1.5 min.
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