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Calyculin a

Manufactured by Cell Signaling Technology
Sourced in United States

Calyculin A is a natural product extracted from the marine sponge Discodermia calyx. It is a potent inhibitor of protein phosphatases 1 and 2A, which play important roles in cellular signaling pathways. Calyculin A is commonly used as a research tool in cell biology and biochemistry studies to investigate the effects of protein phosphatase inhibition on various cellular processes.

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66 protocols using calyculin a

1

Phosphorylation of Bub1 by CDK1-CyclinB1 and Mps1

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Recombinant GST-Bub1 (12 μg) was incubated with 20 units CDK1-CyclinB1 (New England Biolabs), 0,2 μg Mps1 (TTK; Life Technologies) in protein kinase buffer (50 mM Tris pH 7.5, 10 mM MgCl2, 0.1 mM EDTA, 2 mM DTT, 0.01% Brij 35). 500 μM ATP and 125 nM Calyculin A (Cell Signaling) were added and the reactions were incubated at 30 °C for 1 h. Controls were incubated in kinase buffer and Calyculin A only. 6 μg of phosphorylated protein was resolved on NuPAGE Novex 4–12% Bis-Tris protein gels, which were fixed and stained by Colloidal Blue Staining (Thermo Scientific). The band corresponding to GST-Bub1 was cut out and analysed by mass spectrometry.
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2

Dissecting Akt and Phosphatase Interplay

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HEK293T cells were grown for 48 hrs and then treated with either nothing (control), an Akt-specific inhibitor (AZD-5363, 1 μM, 15406, Cayman Chemical) (Davies et al., 2012 (link); Li et al., 2013 (link)), a protein phosphatase inhibitor (calyculin A, 10 nM, 9902S, Cell Signaling Technology) or both AZD-5363 and calyculin A. In the dual treatment cultures, cells were first treated with AZD-5363 for 1 h to inhibit the action of Akt on GSK3 (i.e., phosphorylation at S9/21), and then calyculin A was applied for 30 min to establish whether protein phosphatases dephosphorylate S9/21 independent of the Akt pathway (protein phosphatases can increase Akt activity via causing accumulation of phospho-Akt or they can directly dephosphorylate GSK3). Lysates were sonicated and centrifuged at 12,000 × g for 10 min, the supernatants were collected for western blotting analysis as above. The Bradford Protein Assay was used to determine total protein concentrations.
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3

Protein Extraction and Analysis Protocol

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Cells were washed with ice-cold PBS and lysed on ice for 30 min with cell lysis buffer containing 20 mM Tris-HCl (pH 7.5), 150 mM NaCl, 1 mM EDTA, 1 mM EGTA, 1% Triton X-100, supplemented freshly with a protease and phosphatase inhibitor cocktail (5872, Cell Signaling Technology), 10nM Calyculin A (Cell Signaling Technology, 9902) and 1 mM DTT (ThermoFisher, R0861). Lysates were subjected to centrifugation at 12,000g for 10 min at 4°C and protein concentrations were determined usin g the Bradford assay (Bio-Rad, 5000006). Protein lysates were boiled for 10 min and subjected to SDS-PAGE electrophoresis. Densitometry was calculated using the Image Lab Software 5.2.1 (Bio-Rad).
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4

Visualizing Actin Dynamics with F-Tractin

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pEGFP-C1 F-tractin-EGFP was a gift from Dyche Mullins (Addgene plasmid # 58473) (Belin et al., 2014 (link)). The tdTomato-F-tractin plasmid was a gift from Dr. John A. Hammer and the MLC-EGFP plasmid was a gift from Dr. Robert Fischer, National Heart, Lung, and Blood Institute. Latrunculin A was purchased from Sigma Aldrich Calyculin A was purchased from Cell Signaling Technology, Y-27632 was purchased from Selleck Chemicals, and dimethyl sulfoxide (DMSO) was purchased from Thermo Fisher Scientific.
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5

Pharmacological Modulation of Intracellular Pathways

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(RS)-3,5-Dihydroxyphenylglycine (DHPG), NNC 55–0396 dihydrochloride (NNC), nimodipine, 2-aminoethoxydiphenylborane (2-APB) and cycloheximide were obtained from Tocris. Rapamycin and Calyculin-A were from Cell Signaling. Calpain inhibitor III was from Calbiochem. Okadaic acid was from Santa Cruz. All the other reagents were from Sigma. Water insoluble compounds were dissolved in DMSO and diluted to reach a final concentration less than 0.1%.
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6

Quantifying IP-10 Expression in Hepatocytes

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The quantity of IP-10-expressing hepatocytes was assessed by Western blot analysis. To this end, the isolated hepatocytes were counted and equal cell numbers were re-suspended in lysis buffer containing protease inhibitor cocktail (3 µl/ml, Sigma) and calyculin A (100 nM, Cell Signaling) followed by 10 min incubation on ice with repeated vortexing. Protein sample buffer (4x concentrated) was subsequently added (40% glycerol; 240 mM Tris; HCl pH 6.8; 8% SDS; 0.04% bromophenol blue; 7% β-mercaptoethanol) and the samples were denatured at 99 °C for 5 min. Samples were stored at −20 °C and denatured again at 99 °C for 5 min upon anew addition of 7% β-mercaptoethanol. The samples were separated using a 15% SDS-polyacrylamide gel followed by electroblotting onto a nitrocellulose membrane. Membranes were incubated first with the primary antibodies against IP-10 or α-tubulin (goat anti mouse IP-10, R&D Systems; rabbit anti mouse α-tubulin, Abcam) at 4 °C overnight and second with the respective horseradish-peroxidase-conjugated antibodies. The enzymatic reaction was detected using the ECL System (Santa Cruz Biotechnology) and the images were acquired by the ChemiDoc-it System (Bio-Rad). The relative concentration of IP-10 (ratio of volume under the integral of IP-10 and α-tubulin) was assessed using Image Lab Software (5.2.1 Bio-Rad).
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7

Comprehensive Cell Culture Reagents

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The following reagents were used for this work: Blasticidin (EMD Millipore): Calyculin A (Cell Signaling Technologies); Hoechst 33342 (Life Technologies); DMEM (Corning); DMEM/F12 1:1 (Gibco); DRAQ5 (Biostatus); fetal bovine serum (FBS; Atlanta Biologicals); Fast SYBR green master mix reagent (Applied Biosystems); FluorSave™ (EMD Millipore); Hoechst 33342 (Invitrogen); goat serum (Gibco); Omnifect (Transomic technologies); PageRuler™ prestained protein ladder 10–180 kD (Thermo Fisher); phalloidin/Alexa488 and phalloidin/Alexa594 (Invitrogen); Polybrene (Santa Cruz Biotechnology); Puromycin (Sigma Aldrich); Trypsin-EDTA, 0.25% (Gibco).
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8

Pharmacological Modulation of Neural Signaling

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Nimodipine, 6-cyano-7-nitroquinoxaline-2,3-dione (CNQX), MK-801, DL-2-Amino-5-phosphonopentanoic acid (APV), Cyclosporin A, and NMDA were obtained from Sigma. FK-506 was obtained from VWR. Calyculin A was obtained from Cell Signaling Technologies. Okadaic acid was obtained from Millipore. The lambda protein phosphatase was obtained from New England Biolabs and was used according to the manufacturer’s instructions.
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9

Modulation of Cell Signaling Pathways

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Drugs used were: Calyculin A (Cell Signaling), Torin1 (Tocris), PD0325901 (Stemgent), SB203580 (Invivogen), SP600125 (Sigma), Kenpaullone (Sigma), LY294002 (Cell Signaling), bFGF (Gemini), EGF (Peprotech), PMA (Cell Signaling), CHX (Sigma), and Doxycycline (Sigma). Treatment conditions are described in detail in the text.
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10

Purification of FLAG-tagged LIN28 variants

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For mass spectrometry analysis, iLIN28A mESCs were treated with: (i) 1 µg/ml Doxycycline (Sigma) for 48 hours to induce FLAG-LIN28A expression, and (ii) 100 nM Calyculin A (Cell Signaling) for 30 minutes immediately prior to harvest to enrich for phosphorylation events. Cells were harvested in cold PBS and immediately lysed in M2 lysis buffer (50 mM Tris-HCl pH 7.5, 150 mM NaCl, 1 mM EDTA, 1% Triton X-100) containing 2X protease and phosphatase inhibitors (Pierce). FLAG-tagged LIN28 variants were purified using the anti-FLAG M2 affinity gel following the manufacturer’s specifications (Sigma).
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