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Ish kit

Manufactured by Thermo Fisher Scientific
Sourced in China

The ISH kit is a laboratory equipment used for in situ hybridization (ISH) analysis. It provides the necessary reagents and tools to perform this technique, which is used to detect and localize specific nucleic acid sequences within cells or tissue sections.

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6 protocols using ish kit

1

Immunohistochemical Analysis of NPC Biomarkers

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NPC biopsies, validated by pathologist Dr. Desheng Xiao (Xiangya Hospital), were obtained from Pathology Department of Xiangya Hospital. The NPC tissue array was purchased from Pantomics (Richmond, CA, USA). Paraffin sections from NPC patient samples were firstly dewaxed and antigen retrieved in citrate buffer using a microwave for 15min. After cooling of the citrate buffer to room temperature, the sections were incubated with PBS (containing 5% bovine serum albumin (BSA), and 3% FBS) for 30 min, and subsequently incubated with HoxB3 (ab83404, Abcam), HoxB13 (ab53931, Abcam), HoxC8 (HPA028911, Sigma) or LMP1 (M0897, DAKO) primary antibody for 1 h. The slides were thoroughly washed three times with PBS (5%BSA, 3%FBS) solution for 10 min each and then incubated for 30 min with HRP- conjugated secondary antibody for 30 min at room temperature. The slides were thoroughly washed three times with PBS before using DAB. The images were surveyed and captured using a CX41 microscope (OLYMPUS, Tokyo, Japan) with the Microscope Digital Camera System DP-72 (OLYMPUS, Tokyo, Japan) and differentially quantified by two pathologists, Dr. Bo Li and Dr. Songqing Fan (The Second Xiangya Hospital, Changsha, China).
In situ hydridization (ISH) was performed using the EBERs HRP conjugated probe and DAB as substrate from ISH kit (Life technologies), according to the instructions of the manufacturers.
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2

Immunohistochemical Analysis of NPC Biomarkers

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NPC biopsies, validated by pathologist Dr. Desheng Xiao (Xiangya Hospital), were obtained from Pathology Department of Xiangya Hospital. The NPC tissue array was purchased from Pantomics (Richmond, CA, USA). Paraffin sections from NPC patient samples were firstly dewaxed and antigen retrieved in citrate buffer using a microwave for 15min. After cooling of the citrate buffer to room temperature, the sections were incubated with PBS (containing 5% bovine serum albumin (BSA), and 3% FBS) for 30 min, and subsequently incubated with HoxB3 (ab83404, Abcam), HoxB13 (ab53931, Abcam), HoxC8 (HPA028911, Sigma) or LMP1 (M0897, DAKO) primary antibody for 1 h. The slides were thoroughly washed three times with PBS (5%BSA, 3%FBS) solution for 10 min each and then incubated for 30 min with HRP- conjugated secondary antibody for 30 min at room temperature. The slides were thoroughly washed three times with PBS before using DAB. The images were surveyed and captured using a CX41 microscope (OLYMPUS, Tokyo, Japan) with the Microscope Digital Camera System DP-72 (OLYMPUS, Tokyo, Japan) and differentially quantified by two pathologists, Dr. Bo Li and Dr. Songqing Fan (The Second Xiangya Hospital, Changsha, China).
In situ hydridization (ISH) was performed using the EBERs HRP conjugated probe and DAB as substrate from ISH kit (Life technologies), according to the instructions of the manufacturers.
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3

In Situ Hybridization with EBERS Probe

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ISH was performed using the EBERs HRP-conjugated probe and DAB as substrate from ISH kit (Life Technologies, California, USA), according to the manufacturer's instructions.
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4

Nasopharyngeal Carcinoma Biopsy Analysis

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NPC biopsies, validated by pathologist Dr. Desheng Xiao (Xiangya Hospital), were obtained from the Department of Pathology of Xiangya Hospital. The NPC tissue array was purchased from Pantomics (Richmond, CA, USA). IHC analysis of paraffin sections from NPC patient or xenograft samples was performed as described previously26 (link),65 (link). In situ hybridization was performed using the EBV-encoded RNA (EBER) HRP conjugated probe and DAB as substrate from the ISH kit (Life technologies), according to the manufacturer’s instructions.
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5

Immunohistochemical Analysis of IKKα Expression

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Five-micrometer-thick sections were obtained for immunohistochemical studies, which were performed on formalin-fixed, paraffin-embedded tissues using standard perosidase immunohistochemistry techniques, heat-induced epitrope retrieval butffer and primary antibodies against IKKα (Cat # IHC-00401, Bethyl). Appropriate positive and negative controls were included. All stained slides were initially reviewed and scored by the first author and re-viewed by three pathologists in a blinded fashion to ensure consistency of interpretation.
ISH was performed using the biotin labeled probe from ISH kit (Life technologies), according to the instruction of the manufacturers. The probe sequence was following: 5′-CAATGTGTTCTAGATGGAGTTAGAGGCTGTG ATAGCTATATGGTT-3′.
IKKα staining was considered positively by ascertaining cytoplasmic and nuclear expression. The determination result was obtained from semi-quantitative classification according to 10 more visual fields (×200). The slides were first scored as 0 (negative), 1 (buff), 2 (pale brown), and 3 (tan). Positive expression of IKKα were scored as 0 (negative), 1+ (<10% of positively-staining tumor cells), 2+ (11–50% of positively-staining tumor cells), 3+ (50–75% of positively-staining tumor cells), and 4+ (>75% of positively-staining tumor cells. Both the scores by multiply were regarded as the determination result.
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6

Validated NPC Biopsy Protocol for Pathological Analysis

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NPC biopsies, validated by pathologist Dr. Desheng Xiao (Xiangya Hospital, Hunan, China), were obtained from the Department of Pathology of Xiangya Hospital. The NPC tissue array was purchased from Pantomics. IHC analysis of paraffin sections from NPC patient or xenograft samples was described previously (28 (link)). In situ hybridization was performed using the EBV-encoded RNA (EBER) horseradish peroxidase–conjugated probe and DAB as substrate from the ISH Kit (Life Technologies), according to the instructions of the manufacturers.
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