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16 protocols using human thrombin

1

APC Generation Assay in Knockout Mice

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APC generation assays were carried out as previously described.39 MLEC from Bambi−/− mice and wild‐type littermates were isolated in parallel and grown to confluency. Cells were washed twice in Hanks buffered salt solutionHBSS and once in assay buffer (20 mM Tris, 100 mM NaCl, 1 mM CaCl2, 0.1% bovine serum albumin pH 7.5) prior to addition of 100 nM recombinant human protein C (see later discussion) together with 2 nM human thrombin (Enzyme Research Laboratories, Swansea, UK). The APC activation occurred at 37 °C and reactions were stopped (0‐60 min) by addition of hirudin (100 nM; Sigma). Control cells were preincubated with 50 nM goat anti‐ thrombomodulin (R&D, Bio‐Techne) antibody for 30 min to block endogenous thrombomodulin and washed three times before addition of protein C. The APC was quantified by cleavage of the chromogenic substrate S‐2366 (0.5 mM; Quadratech Diagnostics for Chromogenix, Epsom, UK). The rate of cleavage was followed for 20 min at 37 °C using an EL x808 plate reader (Perkin Elmer) and the concentration of APC extrapolated from a standard curve of purified human APC (Cambridge Bioscience for Haematologic Technologies Inc., Cambridge, UK). Control experiments lacking thrombin or protein C were performed to demonstrate the specificity of the substrate cleavage.
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2

Anticoagulant Activity Assessment of Sulfated Polymers

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Anti-Xa
and anti-IIa assays
were performed in human PPP. For the anti-Xa assay, a Coatest Heparin
assay kit (Chromogenix) was obtained and performed via the manufacturer’s
recommendations adapted for a 96-well plate. Again, 1/10 volume sulfated
polymers were spiked into the plasma prior to determination of the
anti-Xa activity. For the anti-IIa assay, S-2238 (Chromogenix), human
thrombin, and human antithrombin (Enzyme Research Laboratories) were
utilized. The anti-IIa assay was adapted for a 96-well plate from
the Chromogenix protocol for S-2238. The sulfated polymers were spiked
into the plasma prior to initiation of the assay. To determine the
ATIII dependence of the sulfated polymers, the anti-IIa assay was
repeated with ATIII depleted human plasma (Affinity Biologicals) and
omitted addition of exogenous ATIII. For all assays, pharmaceutical
grade heparin (APP Pharmaceuticals) was used for the standard curves.
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3

Plasma Biomarkers and Coagulation Assays

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Anticoagulated whole blood (EDTA 30 mmol/L pH8) was separated into plasma and cells by centrifugation (14 000g for 10 minutes). Plasma TNFα, IFN‐γ, MIF, and CCL2 were detected using separate specific ELISA kits (R&D Systems, Abingdon, UK) according to the manufacturers’ instructions. Total cholesterol, high‐density lipoprotein and low‐density lipoprotein were determined using kits from Cell Biolabs, and triglycerides with a kit from Abcam, (both Cambridge, UK) according to the manufacturer's protocol. Data were derived from triplicate analysis of each sample.
Thrombin clotting times were measured in 3.2% trisodium citrated plasma according to the protocol of Ignjatovic.16 Briefly, 100 μL mouse plasma was incubated with 2.5 U of human thrombin in a total volume of 300 μL (Enzyme Research Laboratories, Swansea, UK) at 37°C, and the time for a clot to form was measured (n=6 per group). For some experiments plasma was further centrifuged (20 000g for 10 minutes) to minimize the presence of extracellular vesicles.
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4

Thrombin and LPS-Induced Endothelial Permeability

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The following reagents and antibodies were used: Human thrombin (Enzyme Research Laboratories, South Bend, IN); LPS (E. coli serotype 0111: B4) (Cell Signaling Technology, Beverly, MA); Phosphoserine 967 ASK1, P-p38, P-JNK1/2, JNK1/2, p38, PMLC2, MLC2 antibodies (Cell Signaling Technology, Beverly, MA); ASK1, Vinculin, VE-cadherin and ZO-1 antibodies (Santa Cruz Biotechnology Inc., Santa Cruz, CA); JAM-A antibody (BD Biosciences, San Jose, CA); GS-4997 (ASK1 inhibitor) was a gift from Dr. Anton Simeonov (National Center for Advancing Translational Sciences, National Institutes of Health, Rockville, MD); Y7632 (ROCK inhibitor; Millipore, Burlington, MA); SB203680 (p38 inhibitor) and SP600125 (JNK1/2 inhibitor; Calbiochem, MA); Vorapaxar (VPX, PAR1 receptor inhibitor) was a kind gift from Dr. Paul Bray (University of Utah Health Science Center, Salt Lake City, UT); BAPTA-AM and Evans blue (Sigma, St. Louis, MO); MnTMPyP (Santa Cruz, CA, USA); S1P (Avanti, INC).
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5

Mechanisms of Inflammation Regulation

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Human thrombin was purchased from Enzyme Research Laboratories (South Bend, IN). Lipopolysaccharide (LPS) of E. coli origin and DEAE Dextran were purchased from Sigma Chemical Company (St. Louis, MO), and the recombinant TNFα was obtained from Promega (Madison, WI). Antibodies to RelA/p65, IκBα, ICAM-1, and β-actin were from Santa Cruz Biotechnology (Santa Cruz, CA). An antibody to TG2 was obtained from Lab Vision (Fremont, CA). Antibodies to phospho-(Ser276)-RelA/p65 and phospho-(Ser536)-RelA/p65 were obtained from Cell Signaling (Beverly, MA) or from Imgenex (San Diego, CA). Plasmid maxi kit from QIAGEN Inc. (Valencia, CA); RelA/p65 transcription factor assay kit from Cayman Chemical (Ann Arbor, MI); protein assay kit and nitrocellulose membrane were from Bio-Rad Laboratories (Hercules, CA). All other materials were from Fisher Scientific (Pittsburg, PA) or VWR Scientific Products Corporation (Gaithersburg, MD).
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6

Anticoagulant Activity Measurement

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Anti-FXa and anti-FIIa activities were measured using kinetic amidolytic methods on the ACL-Elite instrument. All drugs were supplemented into citrated plasma over a concentration range of 0.62 to 10 µg/mL. Either saline or andexanet alfa at a final concentration of 100 µg/mL was added to individual aliquots of plasma supplemented with each anticoagulant. Bovine FXa (Enzyme Research Laboratories) was diluted in 5.0 nM Tris buffer (pH = 8.4) to a concentration of 1.25 IU/mL and FXa substrate (BioMedica Diagnostics, Connecticut) reconstituted in sterile water to a concentration of 2.5 µM were used in the anti-Xa assay. Human thrombin (Enzyme Research Laboratories) diluted in 5.0 nM Tris buffer (pH = 8.4) to a concentration of 1.25 IU/mL and FIIa substrate (BioMedica Diagnostics) reconstituted in sterile water to a concentration of 1 µM were used in the anti-IIa assay.
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7

Investigating CD44-mediated Leukemia Cell Signaling

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The NB4 cell line was obtained from Meisen (Zhejiang, People's Republic of China). Fetal bovine serum and RPMI 1640 medium were purchased from HyClone (Logan, UT). Hyaluronan and human fibrinogen were obtained from Suolaibao (Beijing, People's Republic of China). Anti–phosphatidylinositol 3-kinase (PI3K) antibodies and anti–protein kinase B (Akt) antibodies were purchased from Wanleibio (Shanghai, People's Republic of China). Anti-mTor, anti–P-mTor, and anti-CD44 antibodies were purchased from Proteintech (Hubei, People's Republic of China). Human thrombin was obtained from Enzyme Research Laboratories (South Bend, IN). The human CD44 enzyme-linked immunosorbent assay (ELISA) kit was obtained from Abcam (Stamford, CT). ATRA, ATO, and DNR were purchased from Sigma (St. Louis, MO). Polyvinylidene difluoride membranes, anti-mouse antibodies, and anti-rabbit antibodies were obtained from Beyotime (Shanghai, People's Republic of China). We prepared Alexa Fluor-488– or Alexa Fluor-647–conjugated lactadherin. Anti-CD41a and anti–P-selectin antibodies were purchased from Abcam.
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8

Molecular Mechanisms of ER Stress Regulation

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Human thrombin was obtained from Enzyme Research Laboratories (South Bend, IN). Tunicamycin was purchased from Sigma. Polyclonal antibodies to ICAM-1, VCAM-1, RelA/p65, β-actin, IκBα, and Lamin B were from Santa Cruz Biotechnology (Santa Cruz, CA). Antibodies to phospho-eIF2α, eIF2α, BiP/GRP78, ATF-4, phospho-AKT, phospho-IKKβ, IKKβ, phospho-(Ser536)-RelA/p65, were obtained from Cell Signaling (Beverly, MA). Tata Binding Protein (TBP) antibody was purchased from Abcam. RelA/p65 transcription factor assay kit was purchased from Cayman Chemical (Ann Arbor, MI) and plasmid maxi kit was from QIAGEN Inc. (Valencia, CA). Protein assay kit and nitrocellulose membrane were from Bio-Rad. Alexa Fluor 488-phalloidin was purchased from Invitrogen. Expression vector encoding Wild type BiP and dominant negative BiP were from Addgene. All other materials were from VWR Scientific Products Corporation (Gaithersburg, MD) and Fisher Scientific (Pittsburgh, PA). SubAB and its non-toxic derivative SubAA272B were purified as previously described [37] (link).
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9

Anticoagulant Reversal Assay Validation

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Unfractionated heparin, enoxaparin, and fondaparinux were supplemented into citrated plasma over a concentration range of 0.62 to 10.0 µg/mL. Either saline as a control or andexanet alfa at a final concentration of 100 µg/mL was added to individual aliquots of plasma supplemented of each anticoagulant. Samples were analyzed using the TriniCLOT aPTT reagent (Diagnostica Stago, Parsippany, New Jersey). Human thrombin (Enzyme Research Laboratories, South Bend, Indiana) reconstituted with 0.025 M CaCl2 at a concentration of 5 U/mL was used to measure thrombin time (TT). All reagents were reconstituted according to the manufacturer’s instructions. Both aPTT and TT were measured using an ACL-Elite (Instrumentation Laboratory, Bedford, Massachusetts). Results were compiled as mean ± SD.
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10

Investigating Immune Cell Activation Compounds

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This study used the following compounds: loxoribine (InvivoGen, CA, USA, cat# tlrl-lox), Pam3CSK4 (InvivoGen, CA, USA, cat# tlrl-pms), human thrombin (Enzyme Research Laboratories, IN, USA, cat# HIIa), prostaglandin E1 (PGE1, Millipore, MA, USA, cat# 538903-1MG), complement C3 (Millipore, cat #204885); GM-CSF (Stemcell Technologies, MA, USA, cat #78015.1), and compstatin (Tocris, MN, USA, cat# 2585). Thrombin and Pam3CSK4 were dissolved in water and blood or isolated cells were treated with 10 μg/mL of Pam3CSK4 or 0.05 U/mL of thrombin. Pam3CSK4 concentration is based on previously known mediation of platelet–neutrophil aggregates8 (link); low concentration of thrombin was used in order to activate platelets without making them form a thrombus. Platelets do not tolerate DMSO at concentrations higher than 0.05%, thus, loxoribine was dissolved in 700 μL DMSO4 and 770 μL water. Cells were treated with 1 mM loxoribine; complement C3 and compstatin were dissolved in HEPES-modified Tyrode’s buffer.
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