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22 protocols using ab22035

1

Comprehensive Protein Analysis in Stem Cells

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The primary antibodies used were: OXPHOS (ab110413, Abcam), TOM20 (sc-11415, Santa Cruz), LC3 (B7931, Sigma for WB), LC3 (M152–3, MBL for immunostaining), pULK1 S757 (6888, Cell Signaling), p62 (610832, BD Bioscience), Ubiquitin (sc-8017, Santa Cruz), LAMP1 (sc-5570, Santa Cruz), TFEB (mbs120432, MyBiosource), Histone H3 (9715, Cell Signalling), GAPDH (ab8245, Abcam), Parkin (sc-32282, Santa Cruz), PINK1 (BC100–494, Novus), MTF2 (M6444, Sigma), OPA1 (612606, BD Bioscience), DLP1 (611113, BD Bioscience), Oct4 (09–0023, Stemgent), Nanog (4903, Cell Signaling Technologies), Sox2 (09–0024, Stemgent), SSEA4 (ab16287, Abcam), TRA 1–81 (09–0011, Stemgent), TRA 1–60 (09–0010, Stemgent) and Nestin (ab22035, Abcam). The secondary antibodies for immunoblot studies were horseradish peroxidase-conjugated anti-mouse (Jackson ImmunoResearch, West Grove, PA) or anti-rabbit (Thermo Fisher Scientific) and for immunofluorescence were anti-mouse or anti-rabbit Cyanine Cy2 or Cy3 labeled (Jackson ImmunoResearch) and anti-mouse or anti-rabbit Alexa Fluor 488 or 555 (Thermo Fisher Scientific).
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2

Immunostaining of Human iPSCs and EBs

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For immunostaining, human iPSCs and EBs were fixed in 4% paraformaldehyde (PFA) for 10 min at room temperature, washed with PBS, and permeabilized in 0.3% Triton X-100 in PBS for 10 min at room temperature. Primary antibodies used were anti-Oct4 (ab18976, Abcam, Cambridge, UK), anti-Nanog (ab62734, Abcam), anti-SOX2 (ab97959, Abcam), anti-TRA-1-60 (ab16288, Abcam), anti-Nestin (ab22035, Abcam), anti-α-SMA (ab5694, Abcam), anti-Brachyury (AF2085, R&D Systems, Minneapolis, MN, USA), and anti-GATA4 (ab134057, Abcam). After primary antibody incubation, samples were washed with PBS and incubated with secondary Alexa Fluor 488-conjugated antibodies (Life Technologies), diluted 1:2,000. Samples were also counterstained with DAPI (200 μg/mL). Slides were observed using an Olympus BX61 research microscope equipped with a cooled CCD camera. Images were captured and analyzed with Applied Imaging software CytoVision.
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3

Western Blot Analysis of Protein Markers

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Total protein was extracted from the brain tissue from the rats in each study group using RIPA buffer (Santa Cruz Biotechnology, Inc.) containing a protease inhibitor (Sigma-Aldrich, St. Louis MO, USA). A bicinchoninic acid (BCA) assay kit (Beyotime, Shanghai, China) was utilized for conducting quantitative analysis of protein concentrations. About 40 μg protein sample was separated using 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) gels and electrophoresis and then transferred to polyvinylidene difluoride (PVDF) membranes (Bio-Rad, Hercules, CA, USA). After treating with 5% skimmed milk, primary and secondary antibodies were utilized to incubate the membranes for 1.5 h. Enhanced chemiluminescence (ECL) (Bio-Rad, Hercules, CA, USA) was used to visualize the blots. Primary antibodies used were to Notch1 (1: 1000) (ab65297; Abcam, Cambridge, MA, USA), PTEN (1: 1000) (ab31392; Abcam, Cambridge, MA, USA), Nestin (1: 1000) (ab22035; Abcam, Cambridge, MA, USA), and GAPDH (1: 2000) (ab9482; Abcam, Cambridge, MA, USA).
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4

Immunohistochemical Analysis of Neural Markers

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Immunohistochemical analyses of the cryosections and cells were conducted as previously described43 (link). DAPI (ZLI-9557, ZSBio) was used for DNA staining to reveal the nuclei. The primary antibodies used for IHC were as follows: Pax6 (PRB-278P, Convance), Tbr2 (ab23345, Abcam), MAP2 (ab11267, Abcam), Nestin (ab22035, Abcam), and GFAP (ab7260, Abcam). Secondary antibodies included Alexa Fluor 488 (CA-11008, Molecular Probes) and 594 (CA-11005, Molecular Probes).
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5

Immunostaining of Pluripotent and Neural Markers

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Cells were fixed in 4% paraformaldehyde for 10–20 min, washed with PBS three times (5 min each), permeabilized with 0.1% triton X-100 for 15 min, incubated in blocking solution (2% BSA) for 1 hour at RT and then in primary antibodies (goat anti-Nanog, Abcam ab77095, 1:500; rabbit anti-Lin28, Abcam ab46020, 1:500; rabbit anti-Oct4, Abcam ab19857, 1:500; mouse anti-SSEA4, Abcam ab16287, 1:200; mouse anti-Nestin, Abcam ab22035, 1:200; rabbit anti-Musashi1, Abcam ab52865, 1:250; rat anti-CTIP2, Abcam ab18465, 1:250; rabbit anti-SATB2, Abcam ab34735, 1:200; chicken anti-MAP2, Abcam ab5392, 1:1000; rabbit anti-FZD9, Origene TA314730, 1:150; chicken anti-EGFP, Abcam ab13970, 1:1000; rabbit anti-Synapsin1, EMD-Millipore AB1543P, 1:500; mouse anti-Vglut1, Synaptic Systems 135311, 1:500; rabbit anti-Homer1, Synaptic Systems 160003, 1:500) overnight at 4°C. The next day, cells were washed with PBS three times (5 min each), incubated with secondary antibodies (Alexa Fluor 488, 555 and 647, Life Technologies, 1:1000) for 1 hour at RT, and washed with PBS three times (5 min each). Nuclei were stained using DAPI (1:10,000). Slides or coverslips were mounted using ProLong Gold antifade mountant (Life Technologies).
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6

Immunostaining of Lentivirus-Transduced Brain Sections

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Lentivirus injected brain sections were post-fixed with 4% PFA for 10 min. Then both lentivirus injected and hNPC injected brain sections were washed with PBS three times and incubated 30 min with blocking solution (PBS/0,1% Triton X-100 containing 10% normal goat serum [Sigma-Aldrich]) and then incubated overnight at 4 °C in blocking solution with primary antibodies: mouse anti-Flag (Sigma, F3165–2 MG, 1:1000); rabbit anti-red fluorescence protein (RFP) (Invitrogen, R10367, 1:1000); rabbit anti-PAX6 (Abcam, ab5790, 1:50); mouse anti-Nestin (Abcam, ab22035, 1:100), rabbit anti-Ki67 (Abcam, ab15580, 1:1000) and mouse anti-human nuclear antigen (Abcam, ab191181, 1:1000). Sections were washed with PBS and incubated for 1 h at room temperature with the secondary antibodies: goat anti-mouse IgG Alexa Fluor 488 (Thermo Fisher, A31560, 1:500); goat anti-rabbit IgG TRITC (Abcam, ab6718, 1:1000) and goat anti-mouse IgG Alexa Fluor 647 (Invitrogen, A32728, 1:1000) diluted in blocking solution. The sections were washed with PBS and mounted with Vectashield Antifade Mounting Medium (Vector Labs, H-1000). Immunofluorescence was visualized and imaged with a Keyence BZ-X810 microscope.
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7

Immunofluorescence Assay for Pluripotency and Lineage Markers

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For the detection of pluripotency and differentiation markers, cells grown in 24-well plates as described above were fixed with 4% paraformaldehyde for 20 min. After that, cells were permeabilized and blocked with 10% donkey serum and 0.1% Triton X-100 in PBS. Subsequently, cells were stained with primary antibodies overnight at 4°C and finally incubated with Fluorochrome-labeled secondary antibodies ALEXA FLUOR (Invitrogen). The primary antibodies used for detecting pluripotency markers were anti-OCT4 (SC-5279, Santa Cruz Biotech), anti-SOX2 (AF2018, R&D), and anti-NANOG (AF1997, R&D). The primary antibodies used for detecting endoderm markers were anti-SOX17 (AF1924, R&D), anti-CXCR4 (MAB173-100, R&D), and anti-GATA4 (SC-25310, Santa Cruz Biotech). The primary antibodies used for detecting mesoderm markers were anti-Brachyury (AF2085, R&D), anti-EOMES (Ab23345, Abcam), and anti-MIXL1 (SC-98664, Santa Cruz Biotech). The primary antibodies used for detecting neuroectoderm markers were anti-NESTIN (AB22035, Abcam), and anti-SOX1 (AF3369, R&D) anti-SOX2 (AF2018, R&D). The secondary antibodies used were donkey anti-goat AF488 (Invitrogen), donkey anti-mouse AF488 (Invitrogen), and donkey anti-rabbit AF488 (Invitrogen). Images were captured and quantified using a Cellomics array scan, and images were processed using Adobe Photoshop CS5.
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8

Immunostaining of Neural Stem Cells

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Cells were seeded in duplicates into µ-Dish 35 mm (60 000 cells/ibidi dish). After 48 h, cells were washed with sterile phosphate-buffered saline (PBS, Thermo Fisher) before being fixed in 4% paraformaldehyde for 30 min (10 min at 4°C followed by 20 min at room temperature). Cells were washed and then permeabilized for 4 min in 0.2% Triton in PBS. Cells were washed again and incubated in blocking buffer (1% bovine serum albumin, and 2% normal goat serum, in PBS) for 1 h at room temperature before incubating with the primary antibody for 2 h. The following primary antibodies were used: Nestin (Abcam, ab22035, 1:100), Vimentin (Abcam, ab8069, 1:200), NG2 (Abcam, ab83178, 1:200), Ki67 (Abcam, ab16667, 1:200), Vinculin (FAK100, Sigma 1:200), and F-actin (FAK100, Sigma 1:500). Secondary antibodies were applied for 1 h (goat anti-mouse Alexa Fluor 488 preadsorbed, Abcam, 1:750 dilution and goat anti-rabbit Alex Fluor 594 preadsorbed, Abcam, 1:750). Nuclei were stained with DAPI (Roche).
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9

Immunofluorescence Staining of Neural Markers

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Cells were fixed with 10% formalin neutral buffer solution for 30 min at room temperature, permeabilized in 0.1% Triton X-100, and blocked with 10% normal goat serum (Thermo Fisher Scientific) in PBS. Primary antibodies were applied for 1 h at room temperature, cultures were washed, and then secondary antibodies were incubated for 1 h at room temperature in the dark. The following antibodies and final dilutions were used: primary antibodies: mouse anti-nestin (ab22035, 1 : 200; abcam, Cambridge, UK); mouse anti-β-tubulin III (ab7751, 1 : 500; abcam); rabbit anti-S100β (ab52642, 1 : 250; abcam); secondary antibodies: goat anti-mouse, anti-human conjugated to Alexa Flour® 488 (A-11001, Thermo Fisher Scientific). Nuclei were counterstained with 4,6-diamidio-2 phenylindole (ProLong® Gold Antifade Mountant with DAPI; Thermo Fisher Scientific).
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10

Immunostaining of Lentivirus-Transduced Brain Sections

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Lentivirus injected brain sections were post-fixed with 4% PFA for 10 min. Then both lentivirus injected and hNPC injected brain sections were washed with PBS three times and incubated 30 min with blocking solution (PBS/0,1% Triton X-100 containing 10% normal goat serum [Sigma-Aldrich]) and then incubated overnight at 4 °C in blocking solution with primary antibodies: mouse anti-Flag (Sigma, F3165–2 MG, 1:1000); rabbit anti-red fluorescence protein (RFP) (Invitrogen, R10367, 1:1000); rabbit anti-PAX6 (Abcam, ab5790, 1:50); mouse anti-Nestin (Abcam, ab22035, 1:100), rabbit anti-Ki67 (Abcam, ab15580, 1:1000) and mouse anti-human nuclear antigen (Abcam, ab191181, 1:1000). Sections were washed with PBS and incubated for 1 h at room temperature with the secondary antibodies: goat anti-mouse IgG Alexa Fluor 488 (Thermo Fisher, A31560, 1:500); goat anti-rabbit IgG TRITC (Abcam, ab6718, 1:1000) and goat anti-mouse IgG Alexa Fluor 647 (Invitrogen, A32728, 1:1000) diluted in blocking solution. The sections were washed with PBS and mounted with Vectashield Antifade Mounting Medium (Vector Labs, H-1000). Immunofluorescence was visualized and imaged with a Keyence BZ-X810 microscope.
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