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9 protocols using hitrap mabselect sure

1

Monoclonal Antibody Production Pipeline

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For each antibody in the first set of 230 designs, nucleotide sequences encoding the designed heavy and light chain sequences were synthesized, cloned into an hIgG1 framework, and used to produce mAbs via transient transfection of HEK293 cells at ATUM (Newark, CA, USA).
For the second set of 204 designs, monoclonal antibody sequences were synthesized (Twist Bioscience), cloned into an IgG1 monocistronic expression vector54 (link) (designated as pVVC-mCisK_hG1), and expressed either at microscale in transiently transfected ExpiCHO cells55 (link) for screening, or at larger scale for down-stream assays. Sequences in this group of 204 designs all contain an additional arginine at the beginning of the light chain constant region with respect to sequences expressed in the first set. Larger-scale monoclonal antibody expression was performed by transfecting (30 ml per antibody) CHO cell cultures using the Gibco ExpiCHO Expression System and protocol for 125ml flasks (Corning) as described by the vendor. Culture supernatants were purified using HiTrap MabSelect SuRe (Cytiva, formerly GE Healthcare Life Sciences) on a 24-column parallel protein chromatography system (Protein BioSolutions). Purified monoclonal antibodies were buffer-exchanged into PBS and stored at 4 °C until use.
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2

Purifying Monoclonal Antibodies from Hybridoma Supernatants

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MAb IgG proteins in supernatants of cloned hybridoma cell lines were prepared by washing cells from T-75 flasks in serum-free Hybridoma-SFM Medium (Thermo Fisher Scientific, catalog 12045076) and seeding 3–6 wells of a 6-well G-Rex plate (Wilson Wolf, catalog 80240M) with the mAb-secreting lines in Hybridoma-SFM Medium. The G-Rex plates were incubated in 7% CO2 at 37°C, with the supernatant typically being harvested and cells split every 1–2 weeks. The G-Rex wells were reseeded up to a maximum of 3 times. MAb supernatants were collected and clarified through a 0.2 μm filter, and then mAbs were isolated by fast protein liquid chromatography (FPLC) on an ÄKTA pure system (Cytiva) using HiTrap Protein G High Performance (Cytiva, catalog 17-0404-01) or HiTrap MabSelect SuRe (Cytiva, catalog 11-0034-95) columns.
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3

High-Throughput Mammalian mAb Production

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The most somatically mutated representatives from each clonal family and members of all public clonotypes were synthesized using a rapid high-throughput cDNA synthesis platform (Twist Bioscience) and subsequently cloned into an IgG1 monocistronic expression vector (designated as pTwist-mCis_G1) for mAb secretion from mammalian cell culture. This vector contains an enhanced 2A sequence and GSG linker that allows simultaneous expression of mAb heavy- and light-chain genes from a single construct upon transfection.63 (link) We performed transfections of ExpiCHO cell cultures using the Gibco ExpiCHO Expression System and protocol for 50 mL mini bioreactor tubes (Corning) as described by the vendor. Culture supernatants were purified using HiTrap MabSelect SuRe (Cytiva) on a 24-column parallel protein chromatography system (Protein Biosolutions). Purified mAbs were buffer-exchanged into PBS, concentrated using Amicon Ultra-4 50-kDa centrifugal filter units (Millipore Sigma) and stored at 4°C until use.
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4

Monoclonal Antibody Capture Optimization

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Capture of monoclonal antibodies from HCCF was conducted with convecdiff membrane with a membrane volume of 1.2 mL for cycling studies with different mAbs and Cytiva HiTrap MabSelect SuRe (see Section 2.2) as a comparison with regard to different critical process parameters (CPP) for one mAb using an ÄKTA Avant 150 chromatography system or Sartorius MU RCC system (Pompey, France). Chromatography was performed with buffers and chromatography recipes mentioned in Table 1 and Table 3.
The load was calculated as 80% of the DBC10% measured at a residence time of 12 s for the membrane or as 80% of the DBC10% measured at a 4 min residence time for the resin depending on the HCCF titer. The load density was conservatively chosen to achieve the desired number of cycles without product loss. Elution pools were collected from 100–100 mAU (using ÄKTA spectrophotometer with a 2 mm path length at λ = 280 nm). Step yield was determined using the mass of the product in the load and pool (both determined by SEC-HPLC).
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5

Anti-SARS-CoV-2 Antibody Cloning and Purification

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Sequences for S309, C118, C135, C952, C1520, C1533, and C1596 anti-SARS-CoV-2 IgG antibodies were previously published (20 (link), 23 (link), 43 (link), 73 (link)). Heavy IgG and light chains for each antibody were cloned into the AbVec2.1 expression plasmid (gift from Dr. Pamela Bjorkman, California Institute of Technology). Fab constructs were obtained by subcloning the variable heavy (VH) and constant heavy chain 1 (CH1) domain from the IgG vectors into an AbVec2.1 expression plasmid with a C-terminal 6x histidine tag. For IgG and Fab expression, heavy and light chains were co-transfected in Expi293F cells using the ExpiFectamine transfection kit (ThermoFisher Scientific, A14525) in a 1:1 ratio; ExpiFectamine transfection enhancer was added 20 h post-transfection. IgGs and Fabs were isolated and purified from filtered cell supernatants via affinity chromatography using HiTrap MabSelect SuRe (Cytiva) and HisTrap HP (Cytiva) columns, respectively. Elutions were concentrated using Amicon spin concentrators and further purified by size-exclusion chromatography on a HiLoad 16/600 Superdex 200 pg (Cytiva) and Superdex 200 Increase 10/300 GL (Cytiva) columns using an AKTA pure 25 M1 system (Cytiva). Proteins were concentrated via Amicon spin concentrators and stored in Tris-Buffered Saline with azide (1x TBS-Az; 20 mM Tris pH 8.0, 150 mM NaCl, 0.02% Sodium Azide) at 4°C.
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6

Recombinant EEEV-Specific Antibody Production

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Recombinant human EEEV-specific and cross-reactive mAbs and Fabs were produced as previously described (Williamson et al., 2020 ) using the ExpiFectamine 293 transfection kit (Gibco). rDENV-2D22 was produced as previously described (Zost et al., 2020 (link)) using the ExpiCHO Expression System (Gibco). Cell supernatant was purified through HiTrap MabSelect SuRe (Cytiva Life Sciences) according to the manufacturer’s protocol on an ÄKTA pure 25M chromatography system. Antibodies were processed as described for hybridoma mAb generation above.
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7

Monoclonal Antibody-Lysosomal Enzyme Fusion Protein

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mTfR-GLB1 was designed and synthesized using established methodologies for monoclonal antibody-lysosomal enzyme fusion proteins [12 (link),13 (link),[16] (link), [17] , [18] (link), [19] (link),[22] (link), [23] (link), [24] (link)]. Briefly, a plasmid encoding the sequence of mTfR-GLB1 was expressed in stable Chinese hamster ovary cells. The supernatant was removed and purified utilizing Protein A purification (HiTrap® MabSelect SuRe™, Cytiva Life Sciences, Marlborough, MA). The final formulation buffer (or vehicle) was adjusted to 25 mM citrate, 150 mM NaCl, pH 6.0.
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8

Generating Humanized Monoclonal Antibodies

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Human mAbs were generated as previously described (Williamson et al., 2020 ). Briefly, cryopreserved PBMCs were thawed, transformed with Epstein-Barr virus (EBV), and fused with the HMMA 2.5 myeloma cell line to generate hybridomas. Hybridomas were cloned by single-cell fluorescence-activated cell sorting and mAbs were purified from hybridoma supernatant filtrate using HiTrap Protein G (Cytiva Life Sciences) or HiTrap MabSelect SuRe (Cytiva Life Sciences) columns on an ÄKTA Pure 25M chromatography system. Antibodies were concentrated using 50K MWCO Amicon® Ultra centrifugal filter units (Millipore) followed by desalting and buffer exchange with 7K MWCO Zeba desalting columns (Thermo Fisher Scientific). The humanized WNV E16 mAb has been described previously (Oliphant et al., 2005 (link)) and was purified by protein A affinity chromatography.
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9

Purification and Analysis of IgG1 Antibodies

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Abrin toxin was prepared by Biointron Biological Inc. (Beijing). CCK-8 detection kits were purchased from Dojindo (Japan). TNT® Coupled Reticulocyte Lysate Systems were purchased from Promega (Cat. No.: L4610). Dulbecco’s modified Eagle medium (DMEM) (Cat. No.: 11965-092), RPMI 1640 media (Cat. No.: 61870-036) and fetal bovine serum (FBS) (Cat. No.: 10438-034) were purchased from ThermoFisher (U.S.). pFRT-KIgG1, a full-IgG expression plasmid fused with the constant regions of IgG1 heavy chain and kappa chain, was prepared in our lab based on the pcDNA5-FRT plasmid (ThermoFisher, Cat. No.: V601020). ExpiCHO-S cells and ExpiCHO™ Expression System (Cat. No.: A29133) were purchased from Gibco (ThermoFisher, U.S.). HiTrap MabSelect SuRe was purchased from Cytiva (U.S.). Alexa-FluorTM 488 and 594 were prepared by Jiaxuan Biotech (Beijing, China). TruStain FcXTM (anti-mouse CD16/32 and anti-Human IgG Fc receptors) were procured from Biolegend. All plastic-ware was procured from NuncTM (Denmark). All other chemicals were from commercial sources and of analytical grade.
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