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5 protocols using odyssey laser imaging system

1

Western Blot Analysis of Pro-GDNF Protein

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The protein extracts (~50 µg/well) were separated by 10% SDS-PAGE and transferred onto nitrocellulose membranes (EMD Millipore, Billerica, MA, USA). The membranes were blocked in 5% bovine serum albumin for 2 hours at room temperature and incubated overnight at 4°C with the primary antibodies, including mouse β-actin polyclonal antibody (1:1000) and rabbit pro-GDNF polyclonal antibody (1:50), produced by GenScript Inc. (Nanjing, China). Both α-pro-GDNF and β-pro-GDNF can be detected using the anti-pro-GDNF antibody designed by our laboratory. The blots were washed with Tris-buffered saline/Tween and then incubated in the dark for 2 hours at room temperature with IRdye secondary antibodies, including goat anti-mouse and goat anti-rabbit antibodies (1:5000; LI-COR Biosciences, Lincoln, NE, USA). After three washes, the membranes were scanned with the Odyssey laser imaging system (LI-COR Biosciences). The gray values of the bands were analyzed with ImageJ software (version 1.48; National Institutes of Health, Bethesda, MD, USA) using β-actin as an internal reference.
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2

Western Blot Analysis of FLAG and OFD1 Proteins

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Proteins were separated by 10% SDS-PAGE and transferred to NT nitrocellulose membranes (66485, BIOTRACE). After blocking with 5% milk, membranes were incubated with anti-FLAG (1:5,000; F1804; Sigma-Aldrich) and anti-OFD1 (1:30,000) for 1 hour at room temperature. After washing with PBS 3 times, the membranes were incubated with secondary antibodies for 1 hour at room temperature. The ChemiDoc Touch Imaging System (Bio-RAD) and Odyssey Laser Imaging System (LI-COR) were used for image acquisition.
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3

Western Blot Analysis of Apoptosis-Related Proteins

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The GCs were lysed in RIPA buffer (Beyotime, Shanghai, China) containing 1% (v/v) PMSF (Boster, Wuhan, China) for 30 min on ice. The lysates were centrifuged at 13,000 rpm for 10 min at 4 °C. Protein concentrations were quantified using a BCA protein assay kit (Boster, Wuhan, China). The proteins (10 µg) were separated using 8% or 10% SDS-PAGE and transferred to polyvinylidene difluoride membranes (Boster, Wuhan, China). The membranes were blocked with 5% non-fat dry milk in Tris-buffered saline (TBS) for 1 h at room temperature. Then, the membranes were incubated with rabbit polyclonal primary antibodies against NICD2 (1:1000, Cell Signaling Technology, Boston, MA, USA), β-catenin (1:1000, Cell Signaling Technology, Boston, MA, USA), Bax (1:500, Bioss, Beijing, China), and caspase-3 (1:500, Bioss, Beijing, China) overnight at 4 °C. After washing with TBS, the membranes were incubated with IRDye® 800CW goat anti-rabbit IgG secondary antibody (1:18,000, LI-COR Biosciences, Shanghai, China) for 1 h at room temperature. The blots were imaged using an Odyssey laser imaging system (LI-COR Biosciences, Lincoln, NE, USA) and quantified using ImageJ software version 1.8.0. The protein levels were normalized to β-actin (1:10,000, BioWorld, Nanjing, China).
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Quantitative Protein Analysis by Western Blot

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Total protein extraction was performed by homogenization and centrifugation at 1,500 × g for 20 min at 4°C, and the concentration of the protein was determined by the bicinchoninic acid assay (BCA) kit (Biyuntian Biotechnological Co., Shanghai, China). Protein samples were separated by 12% SDS-PAGE and transferred onto nitrocellulose membranes (Bio-Rad Laboratories, Inc., Hercules, CA, USA), and blocked with 5% skimmed milk for 2 h. Primary antibodies against rabbit polyclonal anti-NGAL (1:1,000; ab63929; Abcam, Cambridge, UK) and sheep anti-mouse anti-GAPDH (1:500; sc-25778; Santa Cruz Biotechnology, Inc., Dallas, TX, USA) were respectively added, and incubated at 4°C overnight. Following washing in TBST for 5 min three times, the membranes were then incubated with secondary antibody (1:5,000; P/N926-32231; ODYSSEY; LI-COR Biosciences, Inc., Lincoln, NE, USA) for 2 h in the dark. Protein bands were analyzed via an ODYSSEY Laser Imaging system (LI-COR Biosciences, Inc.).
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5

Quantifying H3K36me3 levels in P. sojae mycelia

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Three‐day‐old P. sojae mycelia collected from liquid cultures were ground in liquid nitrogen. Next, 800 μl lysis buffer (1% SDS in Tris‐EDTA buffer) was added to 100 mg of pulverized mycelium powder. Lysates were mixed by vortexing for 30 min at 4°C. Supernatants of protein samples were mixed with loading buffer (Beyotime, P0015) and denatured at 95°C for 10 min. Anti‐H3K36me3 (abcam; ab9050) and anti‐H3 (abcam; ab1791) were used as primary antibodies, and goat anti‐rabbit IRDye 800CW (Odyssey, no. 926‐32211; Li‐Cor) was used as a secondary antibody. The signals were recorded by an Odyssey laser imaging system (Li‐Cor company) and quantified using ImageJ. The H3K36me3 level was calculated as signalH3K36me3/signalH3, and H3K36me3 levels were compared with the levels in WT.
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