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6 protocols using a21125

1

Serologic Assays for SARS-CoV-2 Antibodies

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Methods used for serologic assays to assess antibody responses have been described in detail previously (24 (link)). Plasma was isolated within 12 hours of collection prior to serologic testing with the EUROIMMUN or Abbott ARCHITECT assays. The EUROIMMUN anti–SARS-CoV-2 IgG ELISA was performed according to the manufacturer’s protocol. The cutoff for positivity was an OD ratio ≥ 1.1 based on the manufacturer-provided reference. The Abbott SARS-CoV-2 IgG chemiluminescent microparticle immunoassay (Abbott ARCHITECT) was performed according to the manufacturer’s instructions. A kit calibrator was used to generate the assay index, with values ≥ 1.4 considered positive. nAb titers were measured in plasma that was frozen within a few hours of specimen collection, shipped on dry ice, and then thawed at the time of the assay. nAb titers were assessed using a fluorescence reduction neutralization assay assessing inhibition of SARS-CoV-2 replication in Vero E6 cells (CRL-1586, ATCC). SARS-CoV-2 (2019-nCoV/USA-WA1-A12/2020, US CDC) was detected using a primary antibody targeting nucleoprotein (40143-MM05, Sino Biological) and an Alexa Fluor 594–conjugated secondary antibody (A-21125, Invitrogen). Plasma dilutions of 1:40 that did not result in at least a 50% reduction in viral titer are reported as undetectable (<1:40), as previously described (53 (link)).
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2

Immunofluorescence Staining of Muscle Tissue

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Sections were blocked in 2% bovine serum albumin (BSA) plus M.o.M. (MKB‐2213, Vector Labs) for 60 min. Sections were then incubated in primary antibodies against eMyHC (supernatant 1:20; F1.652, Developmental Studies Hybridoma Bank) and laminin (1:200; L9393, Sigma‐Aldrich) diluted in 2% BSA for 90 min, washed in PBS, and incubated in secondary antibodies against Ms IgG1 AF594 (1:200; A‐21125, Invitrogen) and Rb IgG AF488 (1:200; A‐11008, Invitrogen) diluted in PBS for 60 min. Sections were washed, incubated in DAPI (1:10,000; D1306, Invitrogen) for 15 min, washed in PBS, and cover slipped using PBS and glycerol (1:1).
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3

Immunofluorescence Labeling of Proteins

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Primary antibodies were used in the following dilutions: anti-FLAG M2 mouse monoclonal 1:100 (F1804, Sigma), α-tubulin mouse monoclonal 1:1,000 (T6199, Sigma), and laminin rabbit polyclonal 1:100 (L9393, Sigma). Secondary antibodies and phalloidin were used in the following dilutions: Alexa 488 rabbit 1:1,000 (A11008, Invitrogen, Molecular Probes), Alexa 594 mouse 1:1,000 (A21125, Invitrogen, Molecular Probes), and Phalloidin 635 1:200 (A34054, Thermo Fisher Scientific). Tissue sections were subsequently analyzed using the confocal microscope Leica SPE.
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4

Immunofluorescence Labeling of Proteins

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Primary antibodies were used in the following dilutions: anti-FLAG M2 mouse monoclonal 1:100 (F1804, Sigma), α-tubulin mouse monoclonal 1:1,000 (T6199, Sigma), and laminin rabbit polyclonal 1:100 (L9393, Sigma). Secondary antibodies and phalloidin were used in the following dilutions: Alexa 488 rabbit 1:1,000 (A11008, Invitrogen, Molecular Probes), Alexa 594 mouse 1:1,000 (A21125, Invitrogen, Molecular Probes), and Phalloidin 635 1:200 (A34054, Thermo Fisher Scientific). Tissue sections were subsequently analyzed using the confocal microscope Leica SPE.
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5

Laminin-V Visualization in 3D Cell Culture

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Cells were seeded in 400 μl of growth media supplemented with 2% 3D Culture Matrix (Cultrex 3-D Culture Matrix Reduced Growth Factor Basement Membrane Extract, Trevigen, Gaithersburg, MD) in chamber slides. Laminin-V was visualized using anti-laminin-V antibody (#MAB19562, Millipore) followed by secondary antibody (#A21125, Alexa Fluor 594 goat anti-mouse IgG; 1:1000, Molecular Probes) and nuclei were stained with Vectashield Hard Set Mounting Medium with DAPI (Sigma, St. Louis, MO).
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6

Tibialis Anterior Muscle Tissue Isolation and Imaging

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TA muscle tissue isolation and freezing were performed as described previously11 (link). The muscle was frozen in melting isopentane and stored at −80 °C until further analysis. Sections of 8-μm thickness were stained with hematoxylin and eosin (H&E). Composite brightfield images of the complete TA muscle were acquired using Axio Scan.Z1 microscope and ZEN imaging software (Carl Zeiss Microscopy). Additional labeling of muscle sections was completed by combinations of antibodies and probes including DAPI (1 µg/ml; Molecular Probes D21490), monoclonal anti-mouse CD68 (1 µg/ml; Biorad MCA341R), monoclonal anti-rat laminin (2.5 µg/ml; Abcam ab11576), and polyclonal anti-goat GFP (1 µg/ml; Abcam ab6673). Appropriate isotype-specific-conjugated secondary antibodies (1:200; Molecular Probes A21125, A11055, or A21202) were then applied. Fluorescent imaging of the TA muscle was conducted with an Olympus FluoView FV1000 laser scanning confocal microscope (Olympus America Inc., Melville, NY) mounted on an inverted Olympus IX81 microscope and equipped with Multi-line Argon (458, 488, and 515 nm), HeNeG (543 nm), diode (405 nm), and diode (635 nm) lasers using an Olympus UPLSAPO 20×/0.85 N.A. oil immersion lens. All images were acquired as 12-bit multi-TIFF files.
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