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6 protocols using mab1599

1

Flow Cytometry Analysis of NKG2D Ligands

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The following primary antibodies were used for flow cytometry: anti-MICA (R&D, MAB1300), anti-MICB (R&D, MAB1599), anti-ULBP1 (R&D, MAB1380), anti-ULBP2 (R&D, MAB1298, with cross reactivity to ULBP5 and ULBP6), anti-ULBP3 (R&D, MAB1517), anti-GLUT-1 (abcam, Ab150299), anti-IFNƔ (R&D, MAB285), anti-CD56 (BioLegend, 36503), anti-CD3 (ThermoFisher Scientific, 56-0038-82), anti-σ1 (Sigma-Aldrich, MAB994-I-25UG), anti-CD4 (BioLegend, 344604), anti-CRT (Invitrogen, 902A), anti-ERp57 (BioLegend, 937301) and anti-PVR (BioLegend, 337602). Additionally, anti-KIRL2D3, murine anti-NKG2D, and anti-NKP46 antibodies were purified from hybridomas as previously described (48 (link)). These primary antibodies were stained with AF448-coupled donkey anti-mouse IgG (Jackson ImmunoResearch, 715-545-151) or APC-coupled goat anti-mouse IgG (Thermo Fisher Scientific, 31981). Murine NKG2D-Ig and human NKG2D-Ig fusion protein (R&D, 1299-NK) were followed by secondary staining with PE-coupled F(ab’)₂ fragment goat anti-human IgG (Jackson ImmunoResearch 109-116-088). Additionally, a Fixable Viability Dye eFluor™ 780 (FVD) (Thermo Fisher Scientific, 65-0865-14) was included in the flow cytometry staining to exclude the dead population.
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2

Characterizing NKG2D Ligand Expression

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BT-474 cells were incubated 45 min at 4°C with the following mAbs against hNKG2D ligands: MAB1300 (MICA), MAB1599 (MICB), MAB1380 (ULBP1) and MAB1298 (ULBP2,5,6) (all from R&D Systems). After several washes, bound antibodies were detected with Alexa647-conjugated goat anti-mouse mAb for 45 min at 4°C. Cell viability was evaluated by propidium iodide staining. The fluorescence of cells was acquired on a MACSQuant analyzer.
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3

NK Cell Degranulation Assay: Comprehensive Protocol

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NK degranulation assays were performed in a similar manner to that described previously [39] , [81] (link). Briefly, PBMC (approved by the Cardiff University School of Medicine Ethics Committee Ref. no: 10/20) and incubated overnight with IFN-α (1000 IU/ml) and IL-15 (15 ng/ml, Milenyi Biotech). PBMC (0.5–1×106) were incubated for 6 h with 0.5–1×105 fibroblast targets per well in a 96 well plate at an effector∶target (E∶T) ratio of 10∶1, with the addition of 3 µl per well FITC-conjugated anti-CD107 antibody (cat. no. 555800, clone H4A3, BD Biosciences) or 3 µl per well FITC-conjugated isotype control (cat. no. 555748, BD Biosciences), adding 1 µl/well BD GolgiStop (BD Biosciences) 1 h after beginning the incubation. (For antibody blocking experiments, targets were pre-incubated with anti-MICA (Clone 159277, mouse IgG2B, MAB1300, R&D Systems) or isotype control (MICB non-blocking antibody, Clone 236511, mouse IgG2B, MAB1599, R&D Systems) antibodies at a concentration of 10 µg/ml for 30 min prior to incubation with PBMC). PBMC were harvested and stained with conjugated antibodies against CD3 (anti-CD3 PE-Cy7, cat. no. 737657, Beckman Coulter, High Wycombe, UK) and CD56 (anti-CD56 PE, cat. no. A07788, Beckman Coulter), and fixed in 2% PFA before analysis by flow cytometry (BD Biosciences Accuri C Flow) (Fig. S10A).
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4

Detecting HHV-6A and Viral Protein Expression

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Lysates of HSB-2 or J-Jhan that were kept uninfected or HHV-6A infected for 72 hours were prepared using lysis buffer consisting of 10 mM Tris pH 7.4, 0.6% SDS, 1mM PMSF and 1:100 Aprotinin (Sigma). Also, cells overexpressing viral proteins U20-U24 tagged with a FLAG tag were lysed that way. SDS PAGE was performed using a 12.5% polyacrylamide gel and proteins were transferred onto a nitrocellulose membrane using the tank blot method. The membrane was blocked for 1 hour in 5% skim milk in PBS. Then, following antibodies, all diluted in 5% BSA in PBS, were used to detect the proteins: rabbit-anti-vinculin (1:1000, ab129003, Abcam), mouse-anti-human MICB (1:375, MAB1599, R&D systems), rabbit-anti-human ULBP1 (1:500, H-46, Santa Cruz Biotechnology), mouse-anti-human ULBP3 (1:500, MAB15171, R&D systems), anti-FLAG (DYKDDDDK) (1:1000, L5, Biolegend). The antibodies against vinculin and FLAG tag were detected by anti-rabbit or rat-horseradish peroxidase (HRP, Jackson ImmunoResearch), respectively. Antibodies against ULBP1 and ULBP3 were first incubated with anti-mouse-biotin or anti-rabbit-biotin and subsequently detected with streptavidin-HRP (all Jackson ImmunoResearch).
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5

Analysis of NKG2D Ligand Expression

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For the analysis of NKG2D ligand expression, cells were washed twice and incubated with 5mM EDTA in PBS for 5 min to detach the cells. Spheroids were also treated with 5mM EDTA and manually disrupted to achieve a single cell suspension. Cells were then resuspended in PBS supplemented with 0.03% azide with 5% BSA for blocking. Staining was performed in the same buffer using monoclonal antibodies against MICA (2C10, Santa Cruz, Santa Cruz, CA, USA), MICB (mAb 1599, R&D System, Minneapolis), ULBP1 (mAB 170818, R&D System, Minneapolis), ULBP2 (MAB1298, R&D System, Minneapolis), ULBP3 (Clone 166510, R&D System, Minneapolis), HLA-A, B, C (W6/32, Thermo Fisher, UK), or IgG1, isotype control monoclonal antibodies (eBiosciences, San Diego, CA, USA). Cells were then washed twice and labeled with FITC-labeled polyclonal rabbit anti-mouse IgG (STAR9B, Serotec, Raleigh, NC, USA) or goat anti-mouse IgG Cy5 conjugated (AP124S, Chemicon). Propidium iodide (Sigma) was added at a concentration of 50 µg/ml to identify viable cells. Flow cytometry was performed using a BD®FACSCanto machine and FACSDiva Software (BD Biosciences, San Jose, CA, USA) and analyzed using FlowJo software (Tree Star).
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6

Quantification of MICB and GFP

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The expression of MICB on the cell surface was quantified by flow cytometry using anti-MICB antibody (MAB1599, R&D Systems), whereas that of GFP by its own fluorescence, using a FACScan (Becton Dickinson Immunocytometry Systems, San Jose, California, USA)
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