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6 protocols using irdye 800 goat anti rabbit igg

1

Western Blot Analysis of Cellular Signaling Proteins

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Protein was extracted, quantified, and probed with antibody, as previously described.69 (link) Whole cell lysates were extracted using RIPA buffer (Cell Signaling). Nuclear and cytoplasmic lysates were extracted using the NE-PER Nuclear and Cytoplasmic Extraction Kit, according to the manufacturer (Thermo Scientific). Antibodies included AKT (Cell Signaling, Danvers, MA), phospho-AKT (S473) (Cell Signaling), CXCR4 (Abcam, Cambridge, MA), phospho-CXCR4 (S339) (Abcam), eEF2 (Cell Signaling), GRK4-6 (EMD Millipore, Billerica, MA), GRK5 (C-20) (Santa Cruz Biotechnology, Inc., Santa Cruz, CA), KCNA1 (Abcam), Lamin B1 (Cell Signaling), NPR3 (Abcam), WIP1 (Bethyl, Montgomery, TX), and β-actin (Sigma-Aldrich, St. Louis, MO). Secondary antibodies Alexa Fluor 680 goat anti-mouse IgG (Life Technologies) or IRDye 800 goat anti-rabbit IgG (Rockland, Gilbertsville, PA) were used at a dilution of 1:5,000. Immunoblots were imaged and quantified, as previously described.27 (link)
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2

Western Blot Analysis of Cellular Signaling Proteins

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Protein was extracted, quantified, and probed with antibody, as previously described.69 (link) Whole cell lysates were extracted using RIPA buffer (Cell Signaling). Nuclear and cytoplasmic lysates were extracted using the NE-PER Nuclear and Cytoplasmic Extraction Kit, according to the manufacturer (Thermo Scientific). Antibodies included AKT (Cell Signaling, Danvers, MA), phospho-AKT (S473) (Cell Signaling), CXCR4 (Abcam, Cambridge, MA), phospho-CXCR4 (S339) (Abcam), eEF2 (Cell Signaling), GRK4-6 (EMD Millipore, Billerica, MA), GRK5 (C-20) (Santa Cruz Biotechnology, Inc., Santa Cruz, CA), KCNA1 (Abcam), Lamin B1 (Cell Signaling), NPR3 (Abcam), WIP1 (Bethyl, Montgomery, TX), and β-actin (Sigma-Aldrich, St. Louis, MO). Secondary antibodies Alexa Fluor 680 goat anti-mouse IgG (Life Technologies) or IRDye 800 goat anti-rabbit IgG (Rockland, Gilbertsville, PA) were used at a dilution of 1:5,000. Immunoblots were imaged and quantified, as previously described.27 (link)
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3

Immunoblotting Analysis of p53 Regulatory Proteins

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Protein was extracted, quantified, and probed with antibodies, as described.40 (link) Whole cell lysates were extracted using RIPA buffer (Cell Signaling). Antibodies used included p53 (Cell Signaling, Danvers, MA), Mdm2 (EMD Millipore, Billerica, MA), WIP1 (Bethyl, Montgomery, TX), and β-actin (Sigma-Aldrich, St. Louis, MO). Secondary antibodies Alexa Fluor 680 goat anti-mouse IgG (Life Technologies) or IRDye 800 goat anti-rabbit IgG (Rockland, Gilbertsville, PA) were used at a dilution of 1:5,000. Immunoblots were imaged as previously described.29 (link)
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4

Quantification of OAT1 and BCRP Protein Levels

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The protein levels of OAT1 and
BCRP were determined by Western blotting using 9% (W/V) sodium dodecyl
sulfate polyacrylamide gel electrophoresis (SDS-PAGE). Cell samples
were homogenized in ice-cold Tris-Sucrose (TS) buffer (10 mM Tris-HEPES
and 250 mM sucrose, pH 7.4) containing protease inhibitors (PMSF 100
μM, Aprotinin 5 μg/mL, Leupeptin 5 μg/mL, Pepstatin
1 μg/mL, E64 10 μM). Membrane fractions were obtained
by high shear passage using a microfluidizer LV1 (Microfluidics, Westwood,
AM, USA), and cell lysates were span for 20 and 90 min at 4000 and
25 000 rcf at 4 °C, respectively. Membranes were incubated
with mouse anti-BCRP (1:200 dilution; Abcams, Cambridge, UK) and rabbit
anti-OAT1 antibody (1:100 dilution; Abcams, Cambridge, UK) overnight
at 4 °C. As a loading control, rabbit anti-Na, K-ATPase antibody
(α-subunit, 1:4000 dilution, C356-M09,27 (link)) was used. Secondary antibodies, Alexa fluor 680 goat antirabbit
IgG (1:10 000 dilution; Life Technologies Europe BV), streptavidin
Alexa fluor 680 (1:10 000 dilution; Life Technologies Europe
BV), and IRDye 800 goat antirabbit IgG (1:10 000 dilution;
Rockland, PA). Fluorescence was detected using the Odyssey scanner
CLx (Li-Cor Biosciences, USA). Data were normalized to protein expression
levels of the loading control using ImageJ software (imagej.nih.gov).
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5

Immunoblotting Analysis of p53 Regulatory Proteins

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Protein was extracted, quantified, and probed with antibodies, as described.40 (link) Whole cell lysates were extracted using RIPA buffer (Cell Signaling). Antibodies used included p53 (Cell Signaling, Danvers, MA), Mdm2 (EMD Millipore, Billerica, MA), WIP1 (Bethyl, Montgomery, TX), and β-actin (Sigma-Aldrich, St. Louis, MO). Secondary antibodies Alexa Fluor 680 goat anti-mouse IgG (Life Technologies) or IRDye 800 goat anti-rabbit IgG (Rockland, Gilbertsville, PA) were used at a dilution of 1:5,000. Immunoblots were imaged as previously described.29 (link)
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6

Analyzing Cytoskeletal Proteins in Pancreatic Cells

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Isolated mouse islets and MIN6 cells were lysed in Tris-lysis buffer (10 mM Tris-Cl pH 7.5, 100 mM NaCl, 1% Triton X-100, 10% glycerol, and cOmplete protease inhibitor cocktail [Roche, Basel, Switzerland]) on ice. For SDS-PAGE, 75 μg of total protein in the lysate was loaded per lane and was resolved in a 10% acrylamide gel. Antibodies used are as follows: anti-CAMSAP2 (1:500, #NBP1-21402, Novus Biologicals), anti-α-tubulin (1:1000, #ab18251, Abcam), anti-GM130 (1:200, #610823, BD Biosciences), IRDye 800 goat anti-rabbit IgG (1:5000, Rockland Immunochemicals, Pottstown, PA) and IRDye 700DX goat anti-mouse IgG (1:5000, LI-COR, Lincoln, NE). Blots were imaged using the Odyssey CLx imager (LI-COR).
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