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5 protocols using rabbit anti phospho h2ax

1

Western Blot Analysis of Cell Cycle Regulators

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Antibodies used included mouse anti-Wee1, mouse anti-P53 (Santa Cruz Biotechnology, Santa Cruz, CA, U.S.A.), rabbit anti-phospho-CDK1 (Y15), rabbit anti-phospho-H2AX (S139), mouse anti-phospho-Histone H3 (S10), rabbit anti-Histone H3 (Cell Signaling Technology, Danvers, MA, U.S.A.), mouse anti-CDK1 (Millipore, Billerica, MA, U.S.A.), mouse anti-P21 (BD Biosciences, San Diego, CA, U.S.A.), and mouse anti-Actin (Sigma, St. Louis, MO, U.S.A.). Western blots were performed as previously described [13 (link)].
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2

Proximity Ligation Assay for PARP1 and p97

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Proximity ligation assays were carried out with Duolink® In Situ Red Starter Kit Mouse/Rabbit (Sigma-Aldrich) according to the manufacturer’s protocol. The primary antibodies used were mouse anti-PARP1 (WH0000142M1-100UG), rabbit anti-PARP (Cell Signalling), mouse anti-p97 (ab11433) and rabbit anti-phospho-H2AX (Cell Signalling). The antibodies were used in 1:1500 dilution. Images were acquired on Marianas advanced spinning disk confocal microscope (3i) and analysed with a custom CellProfiler pipeline. Typically, several hundred nuclei were counted per condition from at least two independent biological repeats.
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3

Histological Analysis of Embryonic Tissue

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Histological analysis was performed on whole embryos fixed in neutral buffered formalin for 24 hr. The samples were then paraffin embedded, and 4 μm sections were cut before being stained with hematoxylin and eosin. For immunohistochemistry, samples were cut and stained as described previously (Langevin et al., 2011 (link)), using rabbit anti-phospho-H2AX (Cell Signaling, 2577, 1:50) and rabbit anti-cleaved caspase-3 (Cell Signaling, Asp175 9661L, 1:100).
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4

Investigating DNA Damage Response Pathways

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PD0325901and palbociclib were obtained from Selleckchem. Nutlin-3, tenovin-6, KU-60019, AZ-20, and NU-7441 were from Cayman. Rabbit anti-phospho-Rb (Ser807/811) (8516), rabbit anti-phospho-Rb (Ser807/811) pre-conjugated with Alexa 647 (8974), rabbit anti-p21 (2947), rabbit anti-p53 (2527), rabbit anti-53BP1 (4937) and rabbit anti-phospho-H2AX (9718) were from Cell Signaling Technology. Mouse anti-p21 (556430) was from BD Pharmingen, mouse anti-phospho-H2AX (05–636) was from EMD Millipore, and rabbit anti-cyclin D1 (RM-9104-S0) was from Thermo Scientific. Actinomycin D, cycloheximide and NCS were from Sigma-Aldrich.
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5

Quantification of PARP1 and p97 Interactions

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The PLA assays were carried out using a Duolink in situ red starter kit mouse/rabbit kit (Sigma-Aldrich) according to the manufacturer’s protocol. The primary antibodies used were: mouse anti-PARP1 (Sigma-Aldrich, WH0000142M1), rabbit anti-PARP (Cell Signaling), mouse anti-p97 (Abcam, ab11433) and rabbit anti-phospho-H2AX (Cell Signaling). The antibodies were used at a 1:1,500 dilution. Images were acquired on a Marianas advanced spinning disk confocal microscope (3i) and analysed using a custom CellProfiler pipeline. Typically, several hundred nuclei were counted per condition from at least two independent biological repeats.
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