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3 protocols using ab28258

1

Investigating Inflammatory Signaling Pathways

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IL-1α antibody (SC-7929) was purchased from Santa Cruz Biotechnology. Antibodies directed against phospho-p38 MAPK (4511), p38 MAPK (8690), phospho-JNK (9251), JNK (9252), phospho-ERK (4370), ERK (4695), phosphor-AKT (9611) and AKT (4691) were purchased from Cell Signaling Technology. The antibody for human S100A7 (11141-RP02), soluble recombinant human S100A7 (11141-HNAE), IL17A (12047-HNAE), IL-22 (13059-HNAE), IL-33 (10368-HNAE), IL36γ (10124-HNAE) and TNFα (10602-HNAE) were purchased from Sino Biological Inc. The antibody against β-actin (ab8227), IL-1β (ab2105), RAGE (ab54741) and calpain-1 (ab28258) were purchased from Abcam. Antibody against mS100a7a15 (AP52284) was purchased from Abgent. The inhibitors including SB202190 (S7067), SP600125 (S5567), LY294002 (L9908) and caspase-8 inhibitor (C1230) were purchased from Sigma-Aldrich. PD151746 (S7424) was purchased from Selleck.
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2

Quantification of Neuromuscular Junction Proteins

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Proteins were fractionated by SDS-PAGE (6% or 8% acrylamide; Invitrogen) and transferred to polyvinylidene fluoride membranes. Blots were probed with antibodies to the AChR β-subunit (N8283, RRID:AB_262151; Sigma-Aldrich), Rapsyn (ab156002, RRID:AB_298028; Abcam), MACF1 (gift from R. Liem, Columbia University Medical Center, New York, NY; Chen et al., 2006 (link)), β-Catenin (ab32572, RRID:AB_725966; Abcam), α-Actinin (ab18061, RRID:AB_444218; Abcam), Calpain (ab28258, RRID:AB_725819; Abcam), or MAP1b (ab11266, RRID:AB_297884; Abcam). We used antibodies to the AChR β-subunit to ensure equal loading of proteins in whole-cell lysates and proteins isolated with biotin–α-BGT. We quantified the band intensities with a ChemiDoc imaging system (BioRad), as described previously (Remédio et al., 2016 (link)). The band intensity for each protein was indexed to the band intensity of the AChR β-subunit, and the graphs show the mean values from three separate experiments. The Wilcoxon–Mann–Whitney test was used to determine statistical significance and was conducted using GraphPad Prism 6.0 software.
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3

Immunoprecipitation of HDAC3, Calpain1, and Calpain2

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Cell lysates were generated by incubating cells with an NP-40 lysis buffer with proteinase inhibitor cocktail on ice and then centrifuged at 10000 g for 10 min. Immunoprecipitation was carried out by incubating the lysate with the corresponding antibodies: anti-HDAC3 (ab47237, Abcam), anti-calpain1 (ab28258, Abcam), anti-calpain2 (ab39165, Abcam) and anti-HA (3724, Cell Signaling Technology) with slow agitation overnight at 4°C. Next, 20 μl PureProteome Protein A/G Mix Magnetic Beads (Merck-Millipore) was added and incubated with slow agitation for 4 h at 4°C. Immune complexes were washed extensively, boiled in SDS-sample buffer and analyzed using SDS-PAGE.
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