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Attune nxt software version 2

Manufactured by Thermo Fisher Scientific
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The Attune® NxT software version 2.7 is a data acquisition and analysis software package designed to operate the Attune® NxT Flow Cytometer. The software enables users to configure the instrument, acquire and analyze flow cytometry data.

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3 protocols using attune nxt software version 2

1

Multiparametric Flow Cytometry of T Cells

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Flow cytometry analysis of T lymphocytes was conducted according to the protocol of Joshi et al.75 (link). In brief, 200 μL of whole blood (n = 6/group for Study 1) were diluted 1:10 in red blood cell lysis buffer (RBC, Fisher Scientific, Waltham, MA), centrifuged and pellet resuspended in 500 μL 95% PBS and 5% fetal bovine serum (FBS). 100 μL suspensions were labeled with 0.25 μg of α-CD4-FITC antibody, 0.25 μg of α-CD8a-PE and/or 0.5 μg α-CD3-Cy7 antibody (11–0042-82, 12–0081-82 and 25–0032-80, respectively, Fisher Scientific, Waltham, MA) for 10 min, then 1 mL 95% PBS (Thermo Fisher, Waltham, MA) and 5% FBS (Thermo Fisher, Waltham, MA) were added to dilute samples. The flow cytometry analysis was performed using the Attune® NxT Acoustic Focusing Flow Cytometer (Thermo Fisher Scientific, Waltham, MA, USA) using Attune® NxT software version 2.7 (Thermo Fisher Scientific, Waltham, MA, USA). The population was gated, subdivided by antibody staining and quantified. Data was presented as percentage to absolute count for each channel and plotted and analyzed via 2-way ANOVA and Tukey correction in GraphPad Prism 8 (GraphPad, San Diego, CA).
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2

Isolation and Characterization of Cerebrovascular Cells

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Fresh cerebrovascular tissue was isolated from the brains of r-sham and r-mTBI mice at 6 months post-last injury and processed as previously described (Crouch and Doetsch, 2018 (link)). Briefly, the cerebrovascular pellet (obtained as described above) was resuspended in a collagenase/dispase solution (1 mg/ml) and incubated for 1 h at 37 °C with gentle agitation. Following enzymatic digestion, the tissue was pelleted by centrifugation at 6000 rpm for 3 min and resuspended in a DNAse solution (1 mg/ml, Worthington Biochemical) and subjected to further mechanical digestion via trituration with a pipette to achieve a single cell suspension. The tissue was centrifuged at 6000 rpm for 3 min, the supernatant discarded, and the resulting pellet was resuspended and stained with antibodies against the mural cell-specific N-aminopeptidase (CD13) using anti-CD13-FITC at 1:200 (BD Biosciences), and the brain endothelial cell marker (CD31) using anti-CD31-PE-CY7 at 1:500 (BD Biosciences). For live/dead cell discrimination, the viability dye propidium iodide (Sigma Aldrich) was added to the antibody cocktail. Cells were stained on ice for 30 min in the dark and resuspended in 1% BSA in HBSS. Data were acquired and analyzed using the Attune® NxT Acoustic Focusing Flow Cytometer and Attune® NxT software version 2.7 (Thermo Fisher Scientific, Waltham, MA, USA).
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3

Isolation and Characterization of Cerebrovascular Cells

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Fresh cerebrovascular tissue was isolated from the brains of r-sham and r-mTBI mice at 6 months post-last injury and processed as previously described (Crouch and Doetsch, 2018 (link)). Briefly, the cerebrovascular pellet (obtained as described above) was resuspended in a collagenase/dispase solution (1 mg/ml) and incubated for 1 h at 37 °C with gentle agitation. Following enzymatic digestion, the tissue was pelleted by centrifugation at 6000 rpm for 3 min and resuspended in a DNAse solution (1 mg/ml, Worthington Biochemical) and subjected to further mechanical digestion via trituration with a pipette to achieve a single cell suspension. The tissue was centrifuged at 6000 rpm for 3 min, the supernatant discarded, and the resulting pellet was resuspended and stained with antibodies against the mural cell-specific N-aminopeptidase (CD13) using anti-CD13-FITC at 1:200 (BD Biosciences), and the brain endothelial cell marker (CD31) using anti-CD31-PE-CY7 at 1:500 (BD Biosciences). For live/dead cell discrimination, the viability dye propidium iodide (Sigma Aldrich) was added to the antibody cocktail. Cells were stained on ice for 30 min in the dark and resuspended in 1% BSA in HBSS. Data were acquired and analyzed using the Attune® NxT Acoustic Focusing Flow Cytometer and Attune® NxT software version 2.7 (Thermo Fisher Scientific, Waltham, MA, USA).
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