The largest database of trusted experimental protocols

19 protocols using sting

1

Immunoprecipitation and Western Blot Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were treated with cell lysis buffer for Western and IP (Beyotime). The indicated antibodies were added to cell lysates or supernatant, followed by incubation with gentle rocking overnight at 4°C. Then, protein G agarose beads were added to cell lysates, which was incubated with gentle rocking for 4 h at 4°C. Next, samples were eluted in SDS‐PAGE sample loading buffer and boiled. For immunoprecipitation, anti‐FLAG (AE005; ABclonal), STING (19851‐1‐AP; Proteintech) and MLKL (PA5‐102810; Invitrogen) antibodies were used.
The primary antibodies were used including STING (19851‐1‐AP; Proteintech), hp‐STING (S366, 50907; CST), mp‐STING (S365, 72971; CST), p‐TBK1 (S172; CST), TBK1 (38066; CST), IRF3 (4302; Cell Signaling), p‐IRF3 (S396, 29047; CST), mp‐RIPK3 (T231+S232, ab222320; Abcam), mp‐MLKL(S345, ab196436; Abcam), hp‐RIPK3 (S227, ab209384; Abcam), hp‐MLKL (S358, ab187091; Abcam), hMLKL (A19685; ABclonal), mMLKL (37705; CST), hRIPK3 (86671; CST), mRIPK3 (15828; CST), mp‐RIPK1 (S166, 31122; CST), RIPK1 (3493; CST), LC3 (12741; CST), P62 (A7758; ABclonal), β‐actin (4970; CST), β‐Tubulin (AC021; ABclonal), GAPDH (60004‐1‐Ig; Proteintech), FLAG‐tag (AE063; ABclonal), HA‐tag (ab236632; Abcam), MYC‐tag (AE070; ABclonal) and GFP‐tag (AE012; ABclonal).
+ Open protocol
+ Expand
2

Histological and Immunological Analysis of Lung and Kidney Tissues

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tissue samples of lung and kidney were fixed in buffered formalin solution (4%) and embedded in paraffin. Tissue sections (5 μm) were deparaffinized, rehydrated, and stained with hematoxylin-eosin. For immunohistochemistry, sections were subjected to an antigen retrieval step, followed by blocking for 1 h at room temperature, then stained with IFI204 (Lifespan), Ly-6G/Ly-6c (BioLegend), and F4/80 (BioLegend) antibodies. Subsequently, specific staining was detected using the UltraSensitive S-P Kit and DAB Detection Kit (Maixin-Bio) according to the manufacturer's directions. For immunofluorescence, cells were stained with phospho-IRF3 (Santa Cruz), IFI204 (Lifespan), STING (Proteintech) primary antibodies, and Alexa Fluor® 488-conjugated secondary antibodies (Invitrogen). Kidney cell apoptosis was analyzed by TUNEL staining using a commercial kit (KeyGEN Biotech). DAPI (1 μg/mL) was used to stain nuclei.
+ Open protocol
+ Expand
3

Assessing the Role of MAVS and STING in HIV-1 Replication

Check if the same lab product or an alternative is used in the 5 most similar protocols
MDMs (1.2 × 107) were infected with retroviruses encoding shRNAs directed against MAVS, STING, or a control shRNA (Sigma) and a puromycin‐resistance gene in the presence of Vpx. Infected cells were selected by culture in the presence of puromycin for 5 days, and either used in HIV‐1 replication assays or lysed for immunoblot analysis to measure MAVS and STING expression using antibodies to MAVS (Cell Signaling Technology), STING (ProteinTech), vinculin (Cell Signaling Technology), or  β‐actin (Sigma).
+ Open protocol
+ Expand
4

Western Blot Analysis of STING and IRF3

Check if the same lab product or an alternative is used in the 5 most similar protocols
Briefly, polyacrylamide gel electrophoresis was used to separate proteins which extracted from tissues or cells, and transferred onto polyvinylidene fluoride membranes. Membranes were incubated with primary antibodies including: STING (1:1000; Proteintech, Chicago, IL, USA), IRF3 (1:1000; Proteintech), p-IRF3 (1:1000; Cell Signaling, Boston, MA, USA), GAPDH (1:3000; Proteintech), and then with HRP-conjugated secondary antibody. At last, enhanced chemiluminescence assay was used to detect the reactions.
+ Open protocol
+ Expand
5

Western Blot Analysis of Innate Immune Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Whole-cell extracts were generated by direct lysis with 1× Cell Lysis Buffer (Cell Signaling Technology, #9873) with 1 mM phenylmethylsulphonyl fluoride (PMSF) added immediately before use. Samples with 6× SDS sample buffer added were heated at 100°C for 10 min and resolved by SDS-PAGE and then transferred to a PVDF membrane. The membranes were then examined with primary antibodies, followed by the corresponding HRP-conjugated anti-mouse or anti-rabbit (Proteintech) secondary antibodies. The following antibodies were used: α-tubulin (1 : 1000, Proteintech), cGAS (1 : 1000, Abcepta), TBK1 (1 : 1000, Proteintech), phospho-TBK1 (1 : 1000, CST), STING (1 : 1000, Proteintech), phospho-STING (1 : 1000,CST), IRF3 (1 : 1000, Proteintech), and phospho-IRF3 (1 : 1000, CST).
+ Open protocol
+ Expand
6

Molecular Markers of Cell Death Pathways

Check if the same lab product or an alternative is used in the 5 most similar protocols
Histology, immunohistochemistry and immunofluorescence for tissue or cell were performed as previously described.13 Primary antibodies were used including hp‐RIPK3 (S227, ab209384; Abcam), hp‐MLKL (S358, ab187091; Abcam), STING (19851‐1‐AP; Proteintech), LC3 (12741; CST) and FLAG‐tag (AE063; ABclonal). Nucleus was stained with DAPI.
+ Open protocol
+ Expand
7

Inhibition of Innate Immune Sensors in HIV-1 Infection

Check if the same lab product or an alternative is used in the 5 most similar protocols
MDMs (1.2 × 107) were infected with retroviruses encoding shRNAs directed against MAVS, STING, or a control shRNA (Sigma) and a puromycin-resistance gene in the presence of Vpx. Infected cells were selected by culture in the presence of puromycin for five days, and either used in HIV-1 replication assays or lysed for immunoblot analysis to measure MAVS and STING expression using antibodies to MAVS (Cell Signaling Technology), STING (ProteinTech), vinculin (Cell Signaling Technology), or β-actin (Sigma).
+ Open protocol
+ Expand
8

MAVS and STING Protein Detection

Check if the same lab product or an alternative is used in the 5 most similar protocols
1 × 106 MDMs were lysed in 100 μL of NETN buffer (100 mM NaCl, 20 mM Tris-Cl pH 8.0, 0.5 mM EDTA, 0.05% NP-40) with protease inhibitors (cOmplete, Roche) and phosphatase inhibitor (PhosphoStop, Roche), and protein concentration was determined using BCA protein assay kit (Pierce). Proteins were separated on SDS-PAGE gels and transferred to PVDF membranes (Millipore). Membranes were probed with antibodies to MAVS (Cell Signaling Technology), STING (ProteinTech), vinculin (Cell Signaling Technology), or β-actin (Sigma), developed using Western Lightening Chemiluminescent Substrate (Perkin Elmer), and analyzed in a ChemiDoc imager (Bio-Rad Laboratories).
+ Open protocol
+ Expand
9

Immunoblot and Immunoprecipitation Protocols

Check if the same lab product or an alternative is used in the 5 most similar protocols
For immunoblot assays, NPC or HEK293T cells were subjected to lysis in ice-cold low-salt lysis buffer (LSB, 150 mM NaCl, 50 mM Hepes pH 7.5, 1.5 mM MgCl2,1 mM EDTA, 10% glycerol, 1% Triton X-100) supplemented with 5 mg/mL protease inhibitor cocktail (Roche, Basel, Switzerland). Aliquots of 20–25 μL extracts were subjected to SDS-PAGE. For IP assays, NPC or HEK293T cells were transfected with corresponding expression vectors for indicated times, then FLAG- or Myc-tagged proteins were pulled down using FLAG-beads (Sigma -Aldrich, St. Louis, MO, USA) or Myc-beads (Immuoway, Newark, DE, USA). The following antibodies were used which were directed to: FLAG (Sigma, A8592), β-actin (Sigma, A2228), HA (Roche Applied Science, clone 3F10), Myc (Roche Applied Science, 11814150001), STING (Proteintech, IL, USA, 19851-1-AP), TRIM29 (Proteintech, 17542-1-AP).
+ Open protocol
+ Expand
10

Immunostaining Protocol for DNA Damage Pathway

Check if the same lab product or an alternative is used in the 5 most similar protocols
C-176, ethidium bromide (EtBr) and cyclosporin A (CsA) were obtained from Selleck (Houston, TX, USA). 8-OHDG was obtained from MCE (China). Benzalkonium chloride (BAC) was obtained from Sigma‒Aldrich (Louis, MO, USA). Primary antibodies against dsDNA, cGAS, STING, TBK1, p-TBK1, IRF3 and p-IRF3 were obtained from Proteintech (Chicago, IL, USA), Abcam (Cambridge, UK) or CST (Danvers, MA, USA). The HRP-conjugated secondary antibody was purchased from Invitrogen (Carlsbad, CA, USA) (Table S3).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!