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6 protocols using mir 30a 5p inhibitor

1

Investigating miR-30a-5p Regulation of GLUD1 in H/R Injury

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HK-2 cells has been assigned to 10 groups and treated as follows: Experiment 1: i) control group (cells without any treatment); ii) H/R group (cells exposed to H/R); experiment 2: iii) H/R + negative control 1 (NC1) group (cells treated with Mimic NC before H/R was induced); iv) H/R + mimic group (cells treated with miR-30a-5p mimic before H/R was induced; v) H/R + NC2 group (cells treated with inhibitor NC before H/R was induced); vi) H/R + inhibitor group (cells treated with miR-30a-5p inhibitor before H/R was induced); experiment 3: vii) H/R + NC2 + si-control group (cells treated with inhibitor NC and siRNA NC to GLUD1 before H/R was induced); viii) H/R + inhibitor + si control group (cells treated with miR-30a-5p inhibitor and siRNA NC to GLUD1 before H/R was induced); ix) H/R + NC2 + si-GLUD1 (cells treated with inhibitor NC and siRNA to GLUD1 before H/R was induced); and x) H/R + inhibitor + si-GLUD1 (cells treated with miR-30a-5p inhibitor and siRNA to GLUD1 before H/R was induced).
Mimic NC, inhibitor NC, miR-30a-5p mimic, miR-30a-5p inhibitor, siRNA NC and siRNA GLUD1 were provided by GenePharma Co., Ltd. Cell transfection was conducted following the instructions in the Lipofectamine 2000 transfection kit (Thermo Fisher Scientific, Ltd.). Forty-eight hours after transfection, HK-2 cells were subjected to H/R treatment as mentioned above.
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2

Regulation of SOX9 by miR-30a-5p in Ovarian Cancer

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The overexpression or inhibition of miR-30a-5p was achieved by transfection of miR-30a-5p mimic or miR-30a-5p inhibitor (Genepharma, Shanghai, China). The small interference RNA (siRNA) targeting SOX9 (si-SOX9) was used for knockdown of SOX9 (GeneCopoeia, Guangzhou, Guangdong, China). SKOV3/DDP cells were transfected with miR-30a-5p mimic, NC mimic, si-NC, si-SOX9, miR-30a-5p inhibitor in the presence of si-NC or si-SOX9, respectively. SKOV3 cells were transfected with miR-30a-5p inhibitor and NC inhibitor, respectively.
SKOV3 or SKOV3/DDP cells were seeded in a 12-well plate at a density of 1 × 105 cells ml−1, transfected, and harvested upon growing in the logarithmic growth phase. Upon reaching 50–70% confluency, 800 µl serum-free medium was added to each well. The 12-well plate was added with the mixtures of plasmids and lipo2000 (11668027, Thermo Fisher Scientific, Waltham, MA, USA). The medium was renewed 6 h later. After transfection for 48 h, half of untreated or transfected SKOV3 and SKOV3/DDP cells were preserved. The rest were co-cultured with exosomes for the extraction of RNA and protein.
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3

Role of miR-30a-5p in Podocyte Homeostasis

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Conditionally immortalized mouse podocytes (MPC-5) and human HEK293 cells (h243) were obtained from iCell Bioscience Inc. (Shanghai, China). Podocytes and HEK293 cells were grown in Dulbecco’s modification of Eagle’s medium (DMEM) (GIBCO, New York, USA) containing 10% fetal bovine serum (GIBCO), 1% penicillin-streptomycin, and incubated at 37°C with 5% CO
2. After cell cultures reached a confluence of 70%--80%, podocytes were treated with 80 μM Hcy (Sigma-Aldrich, Darmstadt, Germany) for 48 h. For transfection experiments, miR-30a-5p inhibitor, miR-30a-5p mimic, miRNA negative control (miR-neg), and small interfering RNAs (siRNAs) specifically targeting DNA methyltransferase enzyme 1 (si-DNMT1) were obtained from Gene Pharma (Shanghai, China). Recombinant adenoviruses expressing DNMT1 (Ad-DNMT1) were purchased from HANBIO (Shanghai, China). Then, the cells were seeded in 6-well plates and transfected according to the supplier′s instructions. The siRNA sequences of DNMT1 are as follows: si-NC: 5′-UUCUCCGAACGUGUCACGUTT-3′; si-DNMT1-1: 5′-GCAAAGAGUAUGAGCCAAUTT-3′; si-DNMT1-2: 5′-GCUGGUCUAUCAGAUCUUUTT-3′, and si-DNMT1-3: 5′-CCGAGGCCUUUACUUUCAATT-3′.
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4

siRNA Mediated Knockdown of lncRNA loc339803

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Small interference RNA (siRNA) and control for loc339803 were designed and synthesized by Hanbio gene (Guangzhou, China). Loc339803 full length (pCDH-loc339803) plasmid and controls (pCDH, Cat: CD510B-1) were synthesized by Sangon Biotech (Shanghai, China). MiR-30a-5p mimics, miR-30a-5p inhibitor and the control were designed and synthesized by GenePharma (Shanghai, China). HCC cells were transfected with the siRNA and plasmid following the lip3000 (Invitrogen, USA) manufacturer's instruction. The target sequences of loc339803 were listed as follows: si-loc339803#1: GGTGCGGTCTAGTGATCTA, si-loc339803#2: GCAAAGGTTTCTTATTTAA, and si-loc339803#3: GGTAGGAATCAAGGTTAGA. The target the sequences of snail1 were listed as follow: si-snail1: CCAGGCTCGAAAGGCCTTCA. The sequence of siloc339803#2 was subcloned into the lentiviral shRNA expression vector plko.1 (Addgene, USA). After the 48-hour transfection, the cells were harvested for the subsequent experiments.
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5

Regulation of Loc339803 Expression in HCC

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Small interference RNA (siRNA) and control for loc339803 were designed and synthesized by Hanbio gene (Guangzhou, China). Loc339803 full length (pCDH-loc339803) plasmid and controls (pCDH, Cat: CD510B-1) were synthesized by Sangon Biotech (Shanghai, China). MiR-30a-5p mimics, miR-30a-5p inhibitor and the control were designed and synthesized by GenePharma (Shanghai, China). HCC cells were transfected with the siRNA and plasmid following the lip3000 (Invitrogen, USA) manufacturer's instruction. The target sequences of loc339803 were listed as follows: si-loc339803#1: GGTGCGGTCTAGTGATCTA, si-loc339803#2: GCAAAGGTTTCTTATTTAA, and si-loc339803#3: GGTAGGAATCAAGGTTAGA. The sequence of siloc339803#2 was subcloned into the lentiviral shRNA expression vector plko.1(Addgene, USA). After a 48-h period of transfection, the cells were harvested for the subsequent experiments.
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6

Quantifying miR-30a-5p Expression

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We performed qRT-PCR at 95°C for 10 min, 95°C for 15 s, 60°C for 31 s and 72°C for 31 s for 40 cycles. The reaction was conducted in three replicate wells for each sample and the average data were calculated using the 2 -△△Ct method. U6 was used as an internal control. The 20 μl PCR reaction system included 10μl SYBR Green Mix, 0.7μl forward primer, 0.7μl reverse primer, 3.0μl cDNA and 5.6μl nuclease-free water.
Cell transfection miR-30a-5p-mimics and their negative control, miR-30a-5p-inhibitor and its negative control were synthesized by GenePharma Inc. (Shanghai, China). The BCL2L11 overexpression plasmid, shRNA and negative controls were constructed by Jikai Company (Shanghai, China). Plasmid transfection experiment was carried out with lipofectamine 2000 (Invitrogen, Carlsbad, CA) following the manufacturer's instructions.
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