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134 protocols using stereo discovery v12

1

Microscopic Analysis of Powder Preparations

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To analyze the preparation morphology, we used optical and electron microscopies. We used a Stereo Discovery V.12 binocular microscope (CarlZeiss, Oberkochen, Germany) with white and UV lighting.
SEM images of powder preparations were obtained using a VEGA-3 LMU scanning electron microscope (TESCAN ORSAY HOLDING, Brno–Kohoutovice, Czech Republic) in secondary electron (SE) mode with 5 kV accelerating voltage.
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2

Morphometric Analysis of Plant Specimens

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The vegetative and reproductive morphology was studied on well-developed specimens of the generative age state. For numerical analysis, not less than 25 specimens were studied in each population of each species. Table 1 presents 26 morphological characters studied.
Morphological analysis was carried out using a Carl Zeiss Stereo Discovery V12 stereo microscope equipped with a high-resolution color digital camera AxioCam HRc and AxioVision 4.8 software for image acquisition, processing and analysis (Carl Zeiss Ltd., Göttingen, Germany), and the instrumental platform of the SIAMS Photolab image analysis system (SPF AVEK, 2013–2020) with the module morphometric analysis of plants.
Morphometric data were subjected to ANOVA using the STATISTICA 6.0 software (StatSoft Inc., Tulsa, OK, USA). The differences between means were tested for significance using the LSD test at p ≤ 0.05. In addition, clustering was performed with PCA. For PCA, relative metric parameters were additionally included: 4/3 is the ratio of leaf width to leaf length, 5/3 is the ratio of distance from the base to the widest point of the leaf blade to leaf length, and 24/25 is the ratio of stone length to stone width.
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3

Evaluating Implant-Abutment Marginal Fit

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Experimental in vitro study. 15 implants (C1 Standard Platform, MIS Iberica) were embeded in a polyurethane resin (Modralit 3K) into a silicone (Zetalabor, Zhermack) container. The 15 samples obtained are divided in groups depending on the framework process (n=3). The cobalt-chromium alloy frameworks (Wirobond SG, BEGO) are screwed to a 30 N-cm torque with a torquer. After, the sample is sectioned in half along the vertical axis using a diamond saw (micro grinding machine, EXAKT Technologies). And the gap formation between the different points studied were measured at X100 magnification with a stereomicroscope (Stereo Discovery V12, Zeiss) (Fig. 1).

Study procedure example.

To measure the fit, it is used the program ImageJ. It is measured 4 distances in each side, left and right (Fig. 2).

Areas measured marked in red.

- A: Implant-abutment perimetrical marginal fit (1 point)
- B: Abutment-screw marginal fit (1 point)
- C: Implant-abutment longitudinal marginal fit. A mean of 3 points: basal (=A), middle, apical
- D: Distance between the abutment’s down part and the implant (1 point)
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4

Dual Color Clonal Analysis

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Dual color clonal analysis was generated by crossing ms1096-Gal4, UAS-FLP; FRT42D-GFP animals to dark82 FRT42D; UAS-DsRed. Newly eclosed adult flies were isolated and immobilized with super glue on glass slides and imaged with a stereomicroscope (SteREO Discovery V.12; Carl Zeiss MicroImaging, Inc.) with PentafluarS using a 1.5× PlanApoS lens, an MRm or MRc5 digital camera (Axiocam), a dual color filter and Axiovision Release 4.6 software.
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5

Microscopic Enumeration and Characterization of Microplastics

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Images of stained MPs were taken by a stereomicroscope (SteREO Discovery V12; Carl Zeiss Jena GmbH, Germany) equipped with 2 channel fluorescence (GFP and Cy3/Rhod/RFP) and an X-Cite 120Q fluorescence lamp illuminators. Large MPs (>500 µm) were imaged at 8× magnification and small MPs (<500 µm) were imaged at 40× magnification. This magnification approach is typically applied in visual enumeration of MPs in environmental samples [27 (link),28 (link),29 (link)]. The following two fluorescence ranges were chosen: green (excitation at 470/47 nm, emission at 525/50 nm) and red (excitation at 545/25 nm, emission at 605/70 nm). ImageJ image analysis software was used to assess fluorescence intensities as well as surface area of the stained MPs. Attenuated Total Reflection-Fourier Transform Infrared spectroscopy (ATR-FTIR, Cary 600, Agilent Technologies, Santa Clara, CA, USA) was utilized to collect IR spectra of MPs before and after dyeing.
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6

Photostimulation of Transgenic Animals

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Synchronized young adult animals were transferred to retinal plates for roughly 18 hours prior to experiment. To prepare retinal plates, an overnight culture of OP50 was mixed with all-trans retinal to a final concentration of 100 μM and 150 μl of the mix was seeded onto individual NGM agar plates. Plates were stored at 4°C under dark conditions and used within one week. Photostimulation experiments were conducted using a fluorescent dissecting microscope (Zeiss steREO Discovery.V12) equipped with a GFP filter set. Light intensities were measured at the surface of assay plates using a light meter. For all photostimulation experiments, control and experimental animals were treated similarly except that controls did not receive retinal exposure.
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7

Rice Reproductive Development Analysis

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Flowers were collected from mutant and wild-type rice plants to analyze reproductive development. The anther and pistil images were taken with a microscope (SteREO Discovery V12, Carl Zeiss, Zena, Germany). To examine the ultrastructure of pollen, Osfuct (HM, homozygote, HT, heterozygote), rescued, and wild-type pollen images were captured by a JEOL JSM–7500FA (JEOL Ltd., Tokyo, Japan) analytical field-emission scanning electron microscope after coating with tungsten particles using ion (magnetron) sputter coater (Hitachi E-1030) in vacuum. The pollen grains were stained with 80% (w/v) potassium iodide and 10% iodine to determine pollen viability.
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8

Marine Invertebrate Specimen Processing

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Between four and twelve specimens per species per site were selected. In the laboratory, specimens were cleaned with 96% molecular grade ethanol under a stereomicroscope, and individual photos were taken utilising a stacking microscope (Zeiss SteREO Discovery V12). Individuals were subsequently placed in tubes containing 96% molecular grade ethanol for further wash and removal of any contamination on the shell. Individuals were air dried, then placed in individual tubes containing 200 μl of lysis buffer with Proteinase K. DNA extractions were conducted using the QIAamp® DNA Micro kit (Qiagen, Germany) according to manufacturer’s instructions. DNA concentration was measured using the DropSense96 platform (Trinean, Belgium). Total DNA concentration was standardised to 2 ng per μl across all samples.
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9

Histochemical GUS Assay in Arabidopsis

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Histochemical GUS assay was carried out using the method as described previously (Jefferson, 1987 (link)). Two week old Arabidopsis seedlings with or without treatment were kept in GUS staining buffer containing 1 mM 5-bromo-4-chloro-3-indolyl β-D-glucuronidase (HiMedia), 100 mM sodium phosphate (pH 7.5), 0.5 mM potassium ferricyanide and 0.5 mM potassium ferrocyanide, 10 mM ETDA and 0.1 % (v/v) Triton-X 100 and a vacuum of 400 mm of Hg was applied for 5 min. Seedlings were incubated at 37°C overnight and cleared with 70% ethanol in order to remove chlorophyll for clear visualization of blue color of GUS stain. The stained seedlings were then observed and photographed under Carl-Zeiss Stereo DiscoveryV12 with AxioVision software.
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10

C. elegans Imaging Protocols

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C. elegans were imaged using either a Zeiss AxioCam 506 mono camera mounted on a Zeiss Axio Imager Z2 microscope, a Zeiss AxioCam MRc camera mounted on a Zeiss SteREO Discovery V12 stereoscope or a ZEISS LSM800 confocal microscope. Exposure times were the same for each sample in each experiment.
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