The largest database of trusted experimental protocols

Labnirs

Manufactured by Shimadzu
Sourced in Japan

LABNIRS is a near-infrared spectroscopy (NIRS) system designed for laboratory use. It measures changes in the concentration of oxygenated and deoxygenated hemoglobin in the brain or other tissues, providing information about regional cerebral blood flow and oxygen metabolism.

Automatically generated - may contain errors

24 protocols using labnirs

1

Continuous Wave fNIRS System for Cerebral Hemodynamics

Check if the same lab product or an alternative is used in the 5 most similar protocols
A continuous wave fNIRS system (LABNIRS; Shimadzu, Kyoto, Japan) with continuous wave laser diodes with wavelengths of 780 ± 5 nm, 805 ± 5 nm and 830 ± 5 nm was utilized to measure changes in the concentrations of oxygenated hemoglobin (HbO), deoxygenated hemoglobin (HbR), and total hemoglobin (HbT). The sampling rate was 42 Hz. Considering the measurement requirements and the number of optodes, we designed a unique 14-channels array consisting of 7 infrared optode emitters and 8 optode detectors that were separated by 30 mm.
The fNIRS optodes cap was put on the subject’s head and tightened at the chin to hold it in place (Figure 1B), and the optical optodes arrangement is shown in Figure 1A. Three-dimensional (3D) positions of the emitters and detectors were obtained using a 3D digitizer (FASTRAK, Polhemus, Vermont, USA) in reference to the nasion, central zero (Cz, respect to the International 10–20 system) and bilateral external auditory meatus.
+ Open protocol
+ Expand
2

Functional Near-Infrared Spectroscopy of Motor Cortex

Check if the same lab product or an alternative is used in the 5 most similar protocols
The changes in oxygen-hemoglobin (Oxy-Hb) concentration were measured using a fNIRS optical topography system (LABNIRS, Shimadzu. Kyoto, Japan) with three wavelengths of near-infrared light (780, 805, and 830 nm). Figure 2 shows the positions of the probe and channel. The probes were set over the DLPFC, PMC, and SM. The anatomical location of each channel was determined according to the Talairach Daemon database [29 ,30 ]. The changes in Oxy-Hb concentration were recorded since they indicate representative brain activity [31 (link),32 (link)]. The block design comprised six task blocks, with three blocks in each hand. The sequences of the right- or left-hand tasks were randomly assigned (Figure 2). The six regions of interest (ROIs), three in each hemisphere, included the bilateral DLPFC (left channels: 2, 7, 8, and 14; right channels: 5, 12, 13, and 19), the bilateral PMC (left channels: 28, 29, and 35; right channels: 30, 31, and 37), and bilateral primary SM cortex (left channels: 40, 41, and 47; right channels: 44, 45, and 48). Task-related changes in Oxy-Hb concentrations in every channel in each hemispheric ROI were averaged over the time period of the task (0–60 s after task onset). Finally, the task-related Oxy-Hb concentration changes in each hemisphere were calculated by averaging the Oxy-Hb concentration changes in all channels in each hemisphere’s ROI.
+ Open protocol
+ Expand
3

Multimodal Assessment of Hemodynamic Brain Response

Check if the same lab product or an alternative is used in the 5 most similar protocols
For the assessment of the hemodynamic brain response, which has been shown to correlate with neural activity (Fabiani et al., 2013 (link)), a tethered fNIRS-system (LABNIRS, Shimadzu, Kyoto, Japan) was used. The fNIRS system used continuous wave laser diodes with wavelengths of 780, 805, and 830 nm to measure the HbO2 and HHb at a sampling frequency of 23.8 Hz. Further details of this system, including HbO2 and HHb conversion coefficients, are published in Stuart et al. (2019a (link)). The nasion, inion, and Cz anatomical landmarks for each participant were identified prior to placement of the fNIRS cap. Thirty-two optodes (16 sources, 16 receivers) were attached to the cap with a source-detector separation of ~3 cm, generating 48 channels as shown in Figure 3. To control for different head sizes, a 3D-digitizer (FASTRAK, Polhemus, VT, USA) was used to record the co-ordinates of the nasion, inion, Cz, left, and right pre-auricular points, as well as the optode locations. In addition, heart rate and oxygen saturation were monitored throughout the experiment with a wireless oximeter (Onyx II 6590, Nonin Medical Inc, MN, USA) clipped to the index finger and processed with Nonin software (OEM Evaluation Kit Program Files).
+ Open protocol
+ Expand
4

Prefrontal Cortex Activation Measured by fNIRS

Check if the same lab product or an alternative is used in the 5 most similar protocols
We used a 16 emitters -16 detectors fNIRS system (LABNIRS; Shimadzu Co., Japan) operated at 780, 805, and 830 nm wavelengths, which could simultaneously measure relative changes in concentrations of oxygenated hemoglobin (Oxy-Hb), deoxygenated hemoglobin (Deoxy-Hb), and total hemoglobin. The relative brain activation was assessed via the conversion of light intensity signals using the modified Beer-Lambert law (Cope et al., 1988 ). For each participant, one “3 × 3” (forming 12 measurement channels) and two “2 × 2” (forming 8 measurement channels) measurement patches were placed on the prefrontal cortex (PFC) and bilateral IFG, respectively. The center point of each emitter-detector pair (located 3 cm apart) was defined as the measurement channel (we provide a video of the precise positions of the fNIRS channels in Supplementary Materials). The precise positions of the fNIRS channels was measured by a 3D electromagnetic tracking device (FASTRAK; Polhemus, United States) and registered on the Montreal neurological Institute (MNI) brain space using a virtual registration method (Figure 2) (Zhang et al., 2021 (link)). The sampling rate is 42 Hz.
+ Open protocol
+ Expand
5

Functional Near-Infrared Spectroscopy for Cerebral Blood Flow

Check if the same lab product or an alternative is used in the 5 most similar protocols
We measured subjects’ cerebral blood flow while playing the interactive sports video games using functional near-infrared spectroscopy (fNIRS). In the fNIRS paradigm, infrared light with a wavelength of approximately 800 nm is emitted from above the scalp, and used to measure cerebral blood flow by capturing changes in hemoglobin concentration that occur with neural activity in the brain. The Shimadzu LABNIRS (Shimadzu Co. Ltd., Kyoto, Japan) used in the current study was developed for research purposes, and measures three wavelengths (780 nm, 805 nm, and 830 nm) to detect changes in light absorption, allowing calculation of changes in concentrations of oxygenated and deoxygenated hemoglobin (oxyHb and deoxyHb). We focused on increases in oxyHb, because this appears to reflect task-related cortical activation more directly than decreases in deoxyHb. We defined the patterns of NIRS waveforms using the integral value of the grand-average waveforms in the frontal region. The integral value describes the size of the hemodynamic response during the 60-second activation task period [27 (link),28 (link)].
+ Open protocol
+ Expand
6

fNIRS Hemodynamic Signals Acquisition

Check if the same lab product or an alternative is used in the 5 most similar protocols
Hemodynamic signals were acquired using a continuous-wave fNIRS system (LABNIRS, Shimadzu Corp., Kyoto, Japan). Fifty four channels were acquired for each TD and ASD participant (Fig. 1C) with a sample rate of 30 sample/s. Montreal Neurological Institute (MNI) coordinates41 (link) for each channel and each subject, measured with a three-dimensional (3-D) digitizer (Polhemus Tech, Vermont) and calculated using NIRS-SPM software42 (link).
+ Open protocol
+ Expand
7

Dyadic Hemodynamic Signal Acquisition

Check if the same lab product or an alternative is used in the 5 most similar protocols
Hemodynamic signals were acquired using a 56 optode (28 sources and 28 detectors, split between two heads) continuous wave NIRS system (Shimadzu LABNIRS, Kyoto, Japan) with three wavelengths of light (780, 805 and 830 nm). Each participant in a dyad had the same distribution of 38 channels over both hemispheres (7 source and 7 detectors per hemisphere, Fig. 3A), with a source-detector distance of 3 cm. Before starting the recording, data quality was optimized by adjusting the detector’s gain to maximize signal intensities and improving the optical coupling between the optodes and the scalp (e.g. by moving the hair away from underneath the optodes). Data was collected at a sampling frequency of 8.33 Hz.
+ Open protocol
+ Expand
8

Multichannel fNIRS for Motor Cortex

Check if the same lab product or an alternative is used in the 5 most similar protocols
For data acquisition, LABNIRS (Shimadzu), an fNIRS device with a multichannel continuous wave with three wavelengths (780, 805, and 830 nm) and a sampling rate of 25.7 Hz, was utilized. A total of 12 sources and 12 detectors, resulting in 34 measurement channels, were placed over the motor areas, C3 and C4, according to the international 10–20 system which corresponds to the motor cortex of the right- and left-hand motor execution (see Fig. 4).60 (link) The distance between source and detector was 3 cm.
+ Open protocol
+ Expand
9

Comparing Channel Localization Methods

Check if the same lab product or an alternative is used in the 5 most similar protocols
We compared the channel positions (139 channels; LABNIRS, Shimadzu inc., Kyoto, Japan) determined based on our new video-based method to the positions found using the dominant method in adult participants, the 3-D digitizer (Fastrak, Polhemus, Colchester, VT). We did the comparison twice for each subject ( N10 ) for the same session and compared the positions of the same channels both between the two methods (intermethod validity) and within each one (intramethod reliability). The intramethod comparison was used to estimate the error of each method independently (test–retest reliability).
In addition, we measured the channel position for a separate group of adult subjects ( N10 ) in two separate sessions (separate days, multiple cap placements) to estimate whether the video-based method captured the shifts in cap positioning on the same subject as compared to the 3-D digitizer.
+ Open protocol
+ Expand
10

Multichannel fNIRS Acquisition and Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Hemodynamic signals were acquired using a multichannel, continuous-wave fNIRS system (LABNIRS, Shimadzu Corp., Kyoto, Japan). Each participant was fitted with an optode cap with predefined channel distances of 3 cm. A lighted fiber-optic probe (Daiso, Hiroshima, Japan) was used to remove all hair from the optode channel prior to optode placement. Optodes consisting of 30 emitters and 29 detectors were arranged in a custom matrix, providing a total of 98 acquisition channels. The specific layout with the coverage of the optode channels is shown in Fig 2 and the mean channel coordinates and locations are detailed in S1 Table. Placement of the most anterior channel of the optode holder cap was centered 1 cm above nasion. To assure acceptable signal-to-noise ratios, resistance was measured for each channel prior to recording, and adjustments were made for each optode until all channels met the minimum criteria defined in the LABNIRS recording software [29 (link)–31 (link)].
As is standard for Shimadzu NIRS devices, each emitter fiber connects to laser diodes at three wavelengths (780nm, 805nm, 830nm). Raw optical density variations were translated into changes in relative chromophore concentrations using a modified Beer-Lambert equation, as described previously [32 (link)–34 (link)]. Signals were recorded at 27msec per sample.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!