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12 protocols using igg1 apc

1

Flow Cytometric Analysis of Liver Cells

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The flow cytometry was carried out using the BD Cell Analyzer (BD Bioscience), and the data were analyzed using FlowJo 10 software (BD Bioscience). The analysis of Kupffer cells and LNPCs was performed as described previously with some modifications [6 (link)]. Briefly, cells were collected and incubated with primary antibodies that might include IgG2a-PE, IgG1-APC, APC anti-human CD11b antibody (Biolegend, #301310), and/or F4/80-PE (eBioscience, #12-4801-82) at 4°C for 30 minutes. Cells were then rinsed with PBS three times followed by flow cytometry analysis.
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Flow Cytometry Analysis of Macrophages

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The flow cytometry was carried out using the BD FACSCanto II Cell Analyzer (BD Bioscience). The analysis of THP-1 macrophages, human classical monocytes, and Kupffer cells was performed as described previously with some modifications (Tian et al., 2016 (link)). Briefly, cells were collected and incubated with primary antibodies IgG2a-PE, IgG1-APC, CD14-PE, APC anti-human CD11b antibody (Biolegend, #301310), APC anti-human CD16 antibody (Biolegend, #360705), F4/80-PE (eBioscience, #12-4801-82), or IgG2a-PE (eBioscience, #12-4321-80) at 4°C for 30 minutes. Cells were rinsed with PBS three times before the flow cytometry analysis. Data were analyzed by FlowJo 10 software (BD Bioscience)
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3

Flow Cytometry Analysis of Macrophages

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The flow cytometry was carried out using the BD FACSCanto II Cell Analyzer (BD Bioscience). The analysis of THP-1 macrophages, human classical monocytes, and Kupffer cells was performed as described previously with some modifications (Tian et al., 2016 (link)). Briefly, cells were collected and incubated with primary antibodies IgG2a-PE, IgG1-APC, CD14-PE, APC anti-human CD11b antibody (Biolegend, #301310), APC anti-human CD16 antibody (Biolegend, #360705), F4/80-PE (eBioscience, #12-4801-82), or IgG2a-PE (eBioscience, #12-4321-80) at 4°C for 30 minutes. Cells were rinsed with PBS three times before the flow cytometry analysis. Data were analyzed by FlowJo 10 software (BD Bioscience)
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4

Phenotyping B-cell and T-regulatory subsets

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For analysis of B‐cell populations and T regulatory cells, live single‐cell suspensions were prepared from spleens and stained with propidium iodide (PI; catalog number P4864; Sigma/Merck), CD45R/B220‐PE‐Cy7 (1/400; catalog number RA3‐6B2; BioLegend, San Diego, CA, USA), CD138‐PE (1/400; catalog number 281–2; BioLegend), GL7‐Pacific Blue (1/200; BioLegend), peanut agglutinin (PNA)–fluorescein isothiocyanate (1/400; catalog number L7381; Sigma/Merck), IgG1‐APC (1/400; catalog number RMG1‐1; BioLegend), CD4‐Pacific Blue (1/400; catalog number RM4‐5; BD Biosciences), CD25‐APC (1/100; catalog number PC61; BD Biosciences) and FoxP3‐PE (catalog number MF23; BD Biosciences). Antibodies were diluted in FACS buffer (Hanks' Balanced Salt Solution with 2% fetal calf serum). For staining with anti‐FoxP3, cells were fixed and permeabilized with the Mouse FoxP3 buffer set (BD Biosciences). B‐cell populations were defined as follows: plasma cells, B220lowCD138hi; conventional B cells, B220hi CD138low; GC B cells, B220hiGL7hiPNAhi; non‐GC B cells, B220hiGL7lowPNAlow; isotype switched, B220hiGL7hiPNAhiIgG1hi; nonisotype switched, B220hiGL7hiPNAhiIgG1low. T regulatory cells were identified as CD4+CD25+FoxP3+. Cells were analyzed on a BD FACSCanto II (BD Biosciences) after exclusion of PI+ dead cells. Data were analyzed using FlowJo version 10.6.2 cell cycle analysis software (BD Biosciences).
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5

Exosome Immunocapture and Flow Cytometry

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Immune capture and bead-based flow cytometry were carried out as described previously (8 (link),24 (link),25 (link)). In short, 10 µg exosomes in 100 µl PBS were incubated with 1 µg biotin-labeled anti-CD63 (Cat: 353018, Biolegend, San Diego, CA, USA) for 2 h at room temperature on a shaker. Next, 10 µl ExoCap Streptavidin magnetic beads (MBL Life Science, Woburn, MA, USA) were added and incubated for another 2 h at room temperature on a shaker. Samples were washed using a magnetic rack and subsequently stained with the following antibodies/isotype controls for 1 h at room temperature on a shaker: CD14-PE (0.5 µg, Cat: 12-0149-42) and IgG1-PE (0.5 µg, Cat: 12-4714-42) (both from eBioscience/Thermofisher Scientific), CD16-APC (0.8 µg, Cat: 36076) and IgG1-APC (0.8 µg, Cat: 400122) (both from Biolegend), CD44v3-APC (10 µl, FAB5088A) and IgG2b-APC (10 µl, IC0041A) (both from R&D, Minneapolis, MN, USA). The stained complexes were washed twice using a magnetic rack and finally resuspended in 300 µl PBS for flow cytometry. Detection was performed using a Gallios flow cytometer with Kaluza 1.0 software (Beckman Coulter, Brea, CA, USA) and 10000 events were acquired. Data are presented as relative fluorescent intensity (RFI) which is the mean fluorescence intensity of the stained sample divided by the mean fluorescence intensity of the corresponding isotype control.
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6

Analyzing Human M1 and M2 Macrophages

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We used heparin sodium anticoagulation tubes to collect 5 ml of peripheral blood, and then took several test tubes. Add antibody PI (10 μl)/CD45-cyanine7 (1 μl)/IgG2b-CY5.5 (1 μl)/IgG1-APC (1 μl) (Biolegend Corp., San Diego, CA, USA) to each tube of 100 μl whole blood as a negative control group. PI(10 μl)/CD45-cyanine7(1 μl)/CD86-CY5.5(1 μl)/CD163-APC(1 μl) (Biolegend Corp., San Diego, CA, USA) was used as the experimental group. Add 1 ml of hemolysin to each test tube. The target cell gate can be set more accurately in the FS/SS graph of the flow cytometer. In CD45/SS flow cytometry, the monocyte gate can be set more precisely. Using a three-color scheme, select the CD45/SS map to set a gate, and detect high expression of CD14 (macrophages) in the blood. As per the antibody manufacturer's instructions, human M1 and M2 macrophages were expressed by adding fluorescently labeled mouse antihuman CD14-FITC, CD86-PE-Cyanine5, and CD163-APC monoclonal antibody reagents (10 μL; Biolegend Corp., San Diego, CA, USA). The mixtures were mixed well and allowed to react in a refrigerator at 4°C for 30 min. The mixtures were centrifuged at 1500 rpm for 5 min to remove the supernatants. The obtained cell deposits were resuspended in PBS for flow cytometry analysis.
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7

NK Cell Cytotoxicity Assay

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NK cells were added to K562 cells in a ratio of 5:1, along with anti-CD107a-APC mAB (clone H4A3, BioLegend) or IgG1-APC (BioLegend) and incubated for 1 h at 37°C under 5% CO2. Then, PMA and ionomycin (Cell Stimulation Cocktail, eBioscience, Thermo Fisher Scientific) was added along wth 1× cocktail of Brefeldin A and Monensin (Protein Transport Inhibitor Cocktail, eBioscience), and the cells were incubated 4 h at 37°C under 5% CO2 and analyzed on flow cytometer.
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8

Class Switch Recombination: IgM to IgG1

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Class switch recombination (CSR) from IgM to IgG1 was performed as previously described [11 (link)]. Naïve B lymphocytes were purified from spleens of 2-month-old mice using EasySep™ mouse B cell enrichment kit (STEMCELL Technology, Vancouver, Canada; #19854), according to the manufacturers’ instructions. For each CSR assay, 2 × 104 cells/200 μL were used in duplicates. The cells were stimulated with LPS (lipopolysaccharides, 40 μg/mL; Sigma Aldrich, St. Louis, MO, USA; #437627-5MG) and IL-4 (Interleukin 4, 20 ng/mL; PeproTech, Stockholm, Sweden; #214-14) for 96 h. Then, the cells were blocked with Fc receptor antibody (2.4G2) and normal mouse serum (Invitrogen, Carlsbad, CA, USA; #10410). The cells were washed in PermWash™ (BD Biosciences, NJ, USA; #554723). Intracellular staining was done using fluorescently tagged anti-mouse antibodies (IgG1-APC) (BioLegend, San Diego, CA, USA; #406610) and the succeeding wash was performed in PermWash. The cells were resuspended in 300 μL of CellFix (BD Biosciences, NJ, USA; #340181). Viable CD19+ B lymphocytes were analyzed for IgG1 expression using FlowJo® (Ashland, Oregon, USA) version 7.6 for Windows.
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9

Chondrocyte Phenotypic Characterization

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The chondrocytes were fixed using a fixation/permeabilization solution kit (cat. no. 554715; BD Biosciences) and stained with CD34 (cat. no. 343607; BioLegend, Inc.; 1:100), CD44 (cat. no. 338807; BioLegend, Inc.; 1:100), CD59 (cat. no. 304711; BioLegend, Inc.; 1:100), CD74 (cat. no. 326811; BioLegend, Inc.; 1:100), CD90 (cat. no. 328109; BioLegend, Inc.; 1:100), CD105 (cat. no. 323205; BioLegend, Inc.; 1:100), CD146 (cat. no. 361015; BioLegend, Inc.; 1:100), CD164 (cat. no. 324805; BioLegend, Inc.; 1:100), SOX9-Alexa-647 (cat. no. 565493; BD Pharmingen; BD Biosciences; 1:200), ACAN-PE (cat. no. sc-33695; Santa Cruz Biotechnology, Inc.; 1:100), IgG1-Alexa-647 (cat. no. 557732; BD Pharmingen; BD Biosciences; 1:100), IgG1-PE (cat. no. 400112; BioLegend, Inc.; 1:100), IgG1-APC (cat. no. 400122; BioLegend, Inc.; 1:100), IgG1-FITC (cat. no. 400109; BioLegend, Inc.; 1:100) or IgG2a-APC (cat. no. 400221; BioLegend, Inc.; 1:100) for 30 min at 4˚C. The dilution of the antibody for FACS was ranged from 1:100-1:200. After staining, cells were washed with Perm/Wash Buffer (cat. no. 554715; BD Biosciences) and analyzed by flow cytometry (FACS Canto II; BD Biosciences). Data were analyzed using FlowJo version 10.7 software (FlowJo LLC).
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10

Comprehensive Antibody Panel for EV Characterization

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The primary antibodies used in this study against Rab 5, CD81, CD82, Alix, Emmprin, Caveolin-1 were obtained from Cell Signaling Technology; TSG101, CD9 and CD82 from Abcam, MDR-1 and MDR-3 from Gene Tex; AIF, CD9, Endophilin A2 and CD63 from Santa Cruz Biotechnology; PACSIN2 from Abcam and Santa Cruz Biotechnology; Cyp17A from Novus Biologicals; IgG1-APC from Biolegend. All conjugated antibodies including CD9, CD63, CD81 and CD82 were obtained from BD Pharmingen.
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