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Synergy neo

Manufactured by Agilent Technologies
Sourced in United States, Germany

The Synergy Neo is a multi-mode microplate reader from Agilent Technologies. It is designed to measure a variety of assays in microplates, including absorbance, fluorescence, and luminescence. The Synergy Neo offers a broad detection range and high sensitivity to support a wide range of applications in life science research and drug discovery.

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192 protocols using synergy neo

1

Transfection and Luciferase Assay in HEK293 Cells

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HEK293 cells were reverse transfected using Lipofectamine 2000 Transfection Reagent (Invitrogen) at 80% confluency and seeded in 96-well plates at 20,000 cells per well. GFP expression assessed via on EVOS FL Auto (Life Technologies) was used to assess transfection efficiency. Forty-eight hours post-transfection cells were treated with either vehicle (DMSO) and LXR synthetic agonist (GW3965) at indicated concentrations or increasing concentrations of either BT549 or E0771 conditioned media. Post 24-hour treatment, cells were lysed, and luciferase activity was measured using the Dual-Glo Luciferase Assay System (Promega). Luminescence was measured using Synergy Neo microplate reader (BioTek). The values were normalized using Renilla expression.
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2

CEA and CA125 Quantification Protocol

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The levels of carcinoembryonic antigen (CEA) and cancer antigen 125, CA125 (MUC 16) were detected using a chemiluminescence kit (ABNOVA Corporation, Walnut, CA) according to the manufacturer’s instructions. Briefly, mTiD supernatant was centrifuged at 2,000 x g for 10 minutes to remove debris. Supernatants (50µl) were incubated for 2h at 37oC in antibody coated wells. Chemiluminescence was detected in a microplate reader (BioTek synergy Neo, Winooski, VT) using the Gen5 software. Percent chemiluminescence in test wells was calculated relative to control.
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3

IFNβ Expression and IFN-Responsive Genes

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Analysis of IFN associated genes within the subset of genes increased or decreased in their expression more than 2-fold was accomplished through the resource Interferome (v2.01) www.interferome.org (38 (link)). The analysis was completed on genes differential from the previous time point, or the difference between the infected and mock-treated end points, with a fold change of >2-fold and submitted for searches using the following criteria: species Mus musculus, sample type normal, fold-change 2.0, all IFN types, any treatment type. IFNβ expression was determined as soluble expressed protein from the cell culture supernatant by ELISA. BMDM or RAW cells were seeded in 24-well plates at a density of 3E5/well. Wells were either mock infected or infected identical to RNA sample preparations for 3 biological replicates. The cell culture supernatant was removed at 0, 4, 8, 14, 20, or 26 h post infection (p.i.) and immediately stored at -80°C. Soluble IFNβ was assayed by the Verikine Mouse Interferon Beta ELISA Kit (PBL Assay Science, Piscataway, NJ). ELISA was performed according to the manufacturers protocol. The microtiter plate was read on a Synergy Neo (Biotek, Winooski, VT) and data fit to a four point parameter curve using Prism v7 (GraphPad, La Jolla, CA).
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4

hERG Binding Fluorescence Assay

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hERG binding assay was performed using hERG Fluorescence Polarization Assay (Invitrogen: PV5365) assay kit and Synergy Neo (Biotek) and standard procedures were applied.
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5

Caspase 3/7 Activity Measurement Protocol

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Caspase 3/7 activity was measured using Caspase-Glo 3/7 (Promega) as per the manufacturer’s instructions. Cells were cultured in 384-well plates, treated with 0.15% dimethylsulfoxide or compound (18-point, twofold serial dilution), and read on a BioTek Synergy Neo microplate reader. Values were normalized to CellTiter-Glo (Promega) levels at each time point. Heatmap visualization was generated using an R package called pheatmap using log2-transformed fold-shift values.
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6

Optimized Kinase Assay for Lats1 and Lats2

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The in vitro kinase assay (HTRF KinEASE-STK S1, CisBio 62ST1PEB) was optimized to the linear reaction range of the enzymes Lats1 (Carna 01-123) and Lats2 (Carna 01-124). Reactions were conducted with 10 μM STK1 substrate and 10 μM ATP, unless otherwise indicated. For the ATP-shift assay, ATP was also used at concentrations of 50 and 250 μM. Lats1 was employed at a concentration of 200 pg/μL and Lats2 at 50 pg/μL unless otherwise indicated. For the assay in which Michaelis–Menten constants for ATP were determined, each enzyme was at a concentration of 62.5 pg/μL; Lats1 ran for 30 min, and Lats2 ran for 20 min, all at room temperature. The DMSO concentration was maintained at 0.5% (vol/vol) throughout all experiments, and a Janus 384 MDT (PerkinElmer) equipped with a 50 nL Pintool (V&P Scientific, Inc.) was used to add the compounds dissolved in DMSO to the reaction. The enzyme, substrate, ATP, and TRULI were combined in a low-volume 384-well plate and shaken for 50 min at room temperature unless otherwise indicated. The reaction was stopped by adding the detection reagents, which were prepared at an 8:1 biotin:streptavidin ratio, and shaken for 60 min at room temperature. All reactions were conducted in triplicate and a Synergy NEO (Biotek) was used to detect the signal.
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7

Evaluation of sHDL-WGA-TA Cytotoxicity

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Approximately 5000 NB cells per well were seeded in a 96 well plate in triplicate. As a control WGA-TA alone, SHDL alone and untreated cells were used. Following 24 h incubation time, cells were treated with serial dilutions of either sHDL or sHDL-WGA-TA or WGA-TA starting at 20 μM. Viability after 72 h was evaluated by CellTiter-Glo (CTG) luminescent assay as per the manufacturer’s protocol (Promega, Madison, WI). The luminescence was quantified via a BioTek Synergy Neo plate reader (BioTek, Winooski, VT). Cell viability ratios were calculated using GraphPad Prism 5 software (GraphPad Software, Inc, La Jolla, CA).
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8

Cardiomyocyte Necrosis Assays

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Necrosis in vitro was induced by stimulation of oxidative stress with H2O2 or calcium overload with ionomycin. Plasma membrane permeabilization was determined by PI exclusion and LDH release assays. In brief, cardiomyocytes were incubated with PI (P21493, Thermo Fisher, 2 μg/ml) for 30 min at 37 °C. Necrotic cells (PI+) were examined under a fluorescent microscope. LDH assay was performed using the Cytotoxicity Detection Kit (LDH) (11644793001, Roche) according to the manufacturer's instructions. In addition, cell viability was also assessed using Cell Proliferation Kit I (MTT, Roche). Both LDH and MTT assays were measured with Synergy NEO microplate reader (Biotek).
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9

Cell migration assay using Boyden chamber

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Cell migration assays were performed using Transwell Permeable Supports (Costar Corning, NY, USA) with a pore size of 8.0 um, according to the Boyden chamber method. AGS-1 and HGC-27 cells seeded on the upper chamber supplemented with RPMI-1640 (serum-free) were pre-treated with 20 μM ISO. The lower chamber was supplemented with normal RPMI-1640 medium. After 24 h of incubation, the cells that migrated into the lower chamber were stained with 0.5% crystal violet (30 min) and observed using an Olympus IX73. The cells were further eluted by 50% ethanol and 0.1% acetic acid and detected by BioTek Synergy NEO at 550 nm.
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10

Cell Viability Assay with Vemurafenib

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Cells were seeded into 384-well tissue culture plates (PerkinElmer, Waltham, MA, USA, #6007689) at a density of 1000 cells/well in 20 uL of media and were allowed to attach overnight. The next day, drugs were pre-diluted at 4x final concentration in culture medium then added to the 384-well plates so that the final volume was 40 μL/well. For the single compound dose response experiments, the compound was pre-diluted at 2x the final concentration and 20 uL was added to each well. A PBS or growth medium barrier was added to the outer wells of the plate to limit evaporation. Cells were cultured under these conditions for 72 h. To assess viability, 10 μL of CellTiter-Glo (Promega, Madison, WI, USA, #G7573) was added to each well. Plates were incubated for 5 min at room temperature then briefly centrifuged (4000 rpm, 60 seconds) before being read on a Bio-Tek Synergy Neo plate reader. Viability signal is plotted versus log(Vemurafenib concentration) for each treatment condition. The Area Under the Curve (AUC) was calculated for each curve using GraphPad Prism for the range log concentration from −9 to −5.
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