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46 protocols using omnic

1

FTIR-ATR Analysis of Carrageenan Extracts

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The lyophilized liquid fractions and the extracted crude carrageenan were mixed with KBr and analyzed by Fourier Transform Infrared Attenuated Total Reflectance (FTIR-ATR) (Nicolet 6700, Thermo Scientific, Waltham, MA, USA) equipped with a DTGS KBr detector, and the software used was OMNIC (Thermo Scientific, Waltham, MA, USA). The spectra of the samples were recorded in the selected range of 500 to 1500 nm (spectral resolution: 4 cm−1 and 32 scans min−1). Samples were analyzed at least in duplicate.
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2

ATR-FTIR Analysis of TFN Membranes

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Attenuated total reflection Fourier transform infrared spectroscopy (ATR-FTIR) scans of the polyethersulfone support material, polyethersulfone support material with deposited CNCs, and the final TFN polyamide membrane were performed (Nicolet iS50, ThermoFisher Scientific, Waltham, MA, USA) in air in the mid-infrared region (500–4000 cm−1) and 128 scans were averaged at each collection point. An ATR correction was performed on each scan using analysis software (OMNIC™, ThermoFisher Scientific, Waltham, MA, USA). Data were plotted in Microsoft Excel. No additional data manipulation was performed.
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3

FTIR Analysis of Rice Flour Structure

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The FTIR spectra of rice flour samples were obtained using the FTIR spectrometer (TENSOR 27, Borken, Germany). Samples were equilibrated at 45 °C for 24 h and mixed with KBr (1:75, w/w), followed by grounding and pressing into tablets. The wavenumber range was set in the range of 4000–600 cm−1 at a resolution of 4 cm1 with 64 scans. The spectrum was normalized by using OMNIC (Thermo Fisher Scientific, Waltham, MA, USA). The changes in the short-range order structure of starch were calculated by the absorbance ratio 1047/1022 (R1047/1022). Amide I bands (17001600 cm1) were analyzed using PeakFit 4.12 (SeaSolve Software Inc., San Jose, CA, USA).
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4

Quantifying Protein Aggregation via FTIR

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Analysis of FTIR spectra was performed using Omnic (Thermo Fisher Scientific). Spectra exhibiting strong Mie scattering were eliminated. For all spectra, a linear baseline correction was applied from 1200 to 2000 cm−1. After background subtraction and vector normalization, derivation of the spectra to the second‐order was used to increase the number of discriminative features and to eliminate the baseline contribution. Derivation was done using the Savitsky−Golay algorithm with a nine‐point filter and a polynomial order of three. The β‐aggregation level of proteins was studied by calculating the peak intensity ratio between 1620 and 1635 cm−1 corresponding to β‐sheet structures and at 1656 cm−1, the feature corresponding mainly to α‐helix content. An increase in the 1620−1635 cm−1 component was considered a signature of the higher concentration of amyloid fibrils.23
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5

FTIR Spectroscopy Protocol for Material Analysis

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The infrared spectra were recorded on an FTIR Nicolet Model 6700 spectrophotometer with Omnic software from THERMO Scientific using the SMART ATR reflection attachment and ZnSe 60 crystals. FTIR tests were carried out based on the PN-ISO 6286:1994 standard [49 ].
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6

Polymer Conversion Efficiency Quantification

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The degree of conversion (DC) of the monomers into a polymer disks was used as a measure of polymerization efficiency between EGDMA and EGEMA. The prepared polymer disks were stored at room temperature in airtight glass containers prior to mechanical, physical and chemical characterization for 24 hrs. For FTIR-ATR analysis, the bottom side of the prepared disks was placed in contact with the diamond crystal and force was applied to improve contact and signal. A Nicolet iS50 Fourier Transformation Infrared Spectroscopy (FTIR) system in Attenuated Total Reflectance (ATR) mode using diamond crystal was used in transmittance mode (2cm−1 resolution and 25 scans for each sample) over a 400–4000cm−1 range and the data were converted to absorbance (OMNIC, Thermo Fisher, Waltham, MA). The absorbance data was used to calculate the degree of conversion or polymerization using equation 3 [28 ,29 ].
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7

Chemometric Analysis of Spectral Data

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The data analysis and chemometric models were performed using Simca (Version 13.0, Umetrics, Umeå, Sweden) and Matlab (Version R2017a, Mathworks, Natick, MA, USA). Omnic (Version 8.2, Thermo Fisher, Waltham, MA, USA) and UV Probe (Version 2.34, Shimadzu, Tokyo, Japan) were applied to treat the FT-MIR and UV-Vis spectral data.
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8

FTIR Spectroscopy for Polymer Conversion

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The bottom side of “as prepared” discs ( n=8 for each polymer type) was characterized by Fourier transformation infrared (FTIR) spectroscopy in attenuated total reflectance (ATR) mode and the data was converted to degree of conversion (DC) for macromer polymerization efficiency. For FTIR-ATR analysis, the bottom side of each prepared discs was placed in contact with the diamond crystal. Spectra in transmittance mode was collected over 400–4,000 cm−1 (2.0 cm−1 resolution and 25 scans for each sample) range using the Nicolet iS50 FTIR system in attenuated total reflectance (ATR).18 (link) For uncured macromer, 20 μl macromer mixture was placed on the ATR crystal and FTIR spectrum was collected. The OMNIC (Thermo Fisher, Waltham, MA) software was used or data collection and conversion to absorbance. The absorbance values at 1608 and 1,637 cm−1 for cured polymer and non-cured macromer were used for DC calculation using the reported equation.26 (link),31 (link)
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9

FTIR Spectrometer Analysis of Epoxy Resin

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Nicolet FTIR Spectrometer (iS5, Thermo Fisher Scientific, USA) equipped with an attenuated total reflectance (ATR) ZnSe crystal (iD7, Thermo Fisher Scientific, USA) controlled with OMNIC (Thermo Fisher Scientific, USA) acquired the infrared spectra. Cured samples were mounted firmly (with a torque wrench) and epoxy resin and hardener samples were applied dropwise onto the ATR crystal. Background (n = 32) is collected prior to sampling and subtracted the sample spectra (n = 200). Spectra post-processing: correction for wavelength-dependent penetration depth, baseline, and normalized by dividing the spectra with the peak intensity for the band at 828 cm−1 prior to analysis.
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10

Evaluating Lys/GSH Film Secondary Structure

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The Lys/GSH film was transferred to the quartz sheet and tested with an ATR-FTIR spectrometer (Nicoletetis-50, Thermo Fisher Scientific, Waltham, MA, USA) with 128 scanning times. The infrared curves of the amide Ⅰ and Ⅱ bands of the samples were fitted to calculate the secondary structure content of Lys/GSH films. PeakFit (peakfit v4 version, seasolve software Inc., San Jose, CA, USA) and OMNIC (version 8.2, Thermo Fisher Scientific Inc., Waltham, MA, USA) were used in the process with spectra acquired from each sample [12 (link)].
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